3f7y

KcsA Potassium channel in the partially open state with 17 A opening at T112

Method: X-RAY DIFFRACTION Dmax: 110.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Voltage-gated potassium channel

Streptomyces lividans

UniProt P0A334

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain C; UniProt 21–124 Fragment:UNP residues 21-124 Mutation:H25Q,L90C,R117Q,E120Q,R121Q,R122Q,H124Q antibody fab fragment heavy chain × 1 antibody fab fragment light chain × 1 K POTASSIUM ION × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;298 K;20-25% PEG400, 50mM magnesium acetate, 50mM sodium acetate, VAPOR DIFFUSION, SITTING DROP, temperature 298K Resolution 3.40 Å R-free 0.274
2 Protein heterocomplex Heteromer Protein × 12 PDB declaration: dodecameric(12) Consistent with protein copy count Chain C; UniProt 21–124 Fragment:UNP residues 21-124 Mutation:H25Q,L90C,R117Q,E120Q,R121Q,R122Q,H124Q antibody fab fragment heavy chain × 4 antibody fab fragment light chain × 4 K POTASSIUM ION × 16 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;298 K;20-25% PEG400, 50mM magnesium acetate, 50mM sodium acetate, VAPOR DIFFUSION, SITTING DROP, temperature 298K Resolution 3.40 Å R-free 0.274

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

86 other PDB entries and 95 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KCSA_STRLI
Isoform
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–104; UniProt 21–124

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 3f7y

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 3f7y
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2. Structure Basics 2. Structure Basics

Entry ID entry_id3f7y
Deposition date deposition_date2008-11-10
Structure title titleKcsA Potassium channel in the partially open state with 17 A opening at T112
Keywords keywords;kcsa, open, inactivation, potassium channel, Cell membrane, Ion transport, Ionic channel, Membrane, Transmembrane, Transport, Voltage-gated channel, membrane protein-metal transport COMPLEX ;; membrane protein/metal transport
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier28.22
Radius of gyration Rg (electron density) rg_electron28.19
Forward intensity I(0) i050326900.00
Molecular weight molecular_weight55505.0 kDa
Excluded volume excluded_volume69344 ų
Envelope volume envelope_volume87428 ų
Hydration-shell volume shell_volume27587 ų
Envelope diameter envelope_diameter114.2
Shell Rg shell_rg33.32
Envelope Rg envelope_rg28.80
Shape Rg shape_rg28.14
Total Rg total_rg28.82
Total atoms total_atoms3906
Residues n_residues519
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax110.4
Rg (real space) rg_real28.61
Rg uncertainty (real space) rg_real_error1.49
I(0) (real space) i0_real5.0330e+07
I(0) uncertainty (real space) i0_real_error8.3380e+05
Rg (reciprocal space) rg_reciprocal28.49
I(0) (reciprocal space) i0_reciprocal50320000.0000
Solution quality estimate total_estimate0.7684
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary29.6
Skewness Skewness skewness0.718
Kurtosis Kurtosis kurtosis0.426
Angular range angular_range— – 0.2800 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha8979000.0000
Real-space data points n_real_points57
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.499; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.510; Smooth: 0.981

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 5 domains

CATH v4.4 (5 domains)

Domain ID domain_id3f7yA01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id3f7yA02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id3f7yB01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id3f7yB02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id3f7yC00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70

8. Citations (1)

9. Files and Curves (10)