3hfh

Crystal structure of tandem FF domains

Method: X-RAY DIFFRACTION Dmax: 176.7 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Transcription elongation regulator 1

Homo sapiens

UniProt O14776

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 661–845 Fragment:FF domains: UNP residues 661-845 Non-standard monomer:Yes (specific site not provided by mmCIF) No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;277 K;50mM Bis-Tris pH 6.5, 50 mM Ammonium sulfate, 30% Pentaerythritol ethoxylate, VAPOR DIFFUSION, HANGING DROP, temperature 277K Resolution 2.70 Å R-free 0.283
2 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain B; UniProt 661–845 Fragment:FF domains: UNP residues 661-845 Non-standard monomer:Yes (specific site not provided by mmCIF) No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;277 K;50mM Bis-Tris pH 6.5, 50 mM Ammonium sulfate, 30% Pentaerythritol ethoxylate, VAPOR DIFFUSION, HANGING DROP, temperature 277K Resolution 2.70 Å R-free 0.283

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

28 other PDB entries and 29 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TCRG1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 6–190; UniProt 661–845 Author chain B; PDBConstruct 6–190; UniProt 661–845

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 3hfh

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 3hfh
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2. Structure Basics 2. Structure Basics

Entry ID entry_id3hfh
Deposition date deposition_date2009-05-11
Structure title titleCrystal structure of tandem FF domains
Keywords keywords;helix bundle, Activator, Alternative splicing, Coiled coil, Nucleus, Phosphoprotein, Repressor, Transcription, Transcription regulation, TRANSCRIPTION REGULATOR ;; TRANSCRIPTION REGULATOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier56.12
Radius of gyration Rg (electron density) rg_electron57.54
Forward intensity I(0) i029334500.00
Molecular weight molecular_weight45054.0 kDa
Excluded volume excluded_volume56825 ų
Envelope volume envelope_volume120420 ų
Hydration-shell volume shell_volume21206 ų
Envelope diameter envelope_diameter185.4
Shell Rg shell_rg44.70
Envelope Rg envelope_rg56.36
Shape Rg shape_rg57.65
Total Rg total_rg56.45
Total atoms total_atoms3123
Residues n_residues287
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax176.7
Rg (real space) rg_real57.21
Rg uncertainty (real space) rg_real_error2.44
I(0) (real space) i0_real2.9330e+07
I(0) uncertainty (real space) i0_real_error6.0270e+05
Rg (reciprocal space) rg_reciprocal55.17
I(0) (reciprocal space) i0_reciprocal29240000.0000
Solution quality estimate total_estimate0.5671
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary18.9
Skewness Skewness skewness0.458
Kurtosis Kurtosis kurtosis-0.777
Angular range angular_range— – 0.1400 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha1200000.0000
Real-space data points n_real_points29
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.084; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.116; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

8. Citations (1)

9. Files and Curves (10)