2n4t

NMR structure of Fbp28 WW domain L453W mutant

Method: SOLUTION NMR Dmax: 39.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Transcription elongation regulator 1

Homo sapiens

UniProt O14776

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 428–464 Mutation:L453W No other associated polymer SOLUTION NMR NMR measurement conditions:pH 5.8;285 K;Pressure ambient NMR sample composition:500-1000 uM protein, 25 mM sodium phosphate, 100 mM sodium chloride, 90% H2O/10% D2O | 90% H2O/10% D2O Resolution not provided

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

28 other PDB entries and 30 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TCRG1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–37; UniProt 428–464

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 2n4t

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 2n4t
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2. Structure Basics 2. Structure Basics

Entry ID entry_id2n4t
Deposition date deposition_date2015-07-01
Structure title titleNMR structure of Fbp28 WW domain L453W mutant
Keywords keywordsWW domain, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodSOLUTION NMR

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier9.81
Radius of gyration Rg (electron density) rg_electron9.97
Forward intensity I(0) i0115091000.00
Molecular weight molecular_weight88636.0 kDa
Excluded volume excluded_volume109750 ų
Envelope volume envelope_volume10633 ų
Hydration-shell volume shell_volume8142 ų
Envelope diameter envelope_diameter39.8
Shell Rg shell_rg16.89
Envelope Rg envelope_rg12.14
Shape Rg shape_rg9.91
Total Rg total_rg10.41
Total atoms total_atoms12040
Residues n_residues740
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax39.4
Rg (real space) rg_real9.84
Rg uncertainty (real space) rg_real_error0.50
I(0) (real space) i0_real1.1510e+08
I(0) uncertainty (real space) i0_real_error1.4160e+06
Rg (reciprocal space) rg_reciprocal9.84
I(0) (reciprocal space) i0_reciprocal115100000.0000
Solution quality estimate total_estimate0.7795
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary12.5
Skewness Skewness skewness0.379
Kurtosis Kurtosis kurtosis-0.104
Angular range angular_range— – 0.5000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha20800.0000
Real-space data points n_real_points80
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.520; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.607; Smooth: 0.967

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (1)

7. Fold Classification (SCOP + CATH) 1 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd2n4ta_
Class classb — All beta proteins
Fold Fold foldb.72 — WW domain-like
Superfamily Superfamily superfamilyb.72.1 — WW domain
Family Family familyb.72.1.1 — WW domain

8. Citations (1)

9. Files and Curves (10)