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3j7o

Structure of the mammalian 60S ribosomal subunit

Method: ELECTRON MICROSCOPY Dmax: 204.3 Å Quality: EXCELLENT
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Ribosomal protein uL2

OrganismNot specified

UniProt F2Z567

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain A； UniProt 1–257 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain A 1–257（257 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F2Z567_PIG
Isoform —
PDB entities 4
Chains and sequence ranges Author chain A； PDBConstruct 1–257； UniProt 1–257

Ribosomal protein uL18

OrganismNot specified

UniProt F1S530

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain D； UniProt 1–297 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain D 1–297（297 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1S530_PIG
Isoform —
PDB entities 7
Chains and sequence ranges Author chain D； PDBConstruct 1–297； UniProt 1–297

Ribosomal protein eL8

OrganismNot specified

UniProt I3LVI8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain G； UniProt 1–266 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain G 1–266（266 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name I3LVI8_PIG
Isoform —
PDB entities 10
Chains and sequence ranges Author chain G； PDBConstruct 1–266； UniProt 1–266

Ribosomal protein uL6

OrganismNot specified

UniProt I3LP78

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain H； UniProt 1–192 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain H 1–192（192 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain H 1–192（192 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7R Structure of the translating mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain H 1–192（192 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.90 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name I3LP78_PIG
Isoform —
PDB entities 11
Chains and sequence ranges Author chain H； PDBConstruct 1–192； UniProt 1–192

Ribosomal protein uL5

OrganismNot specified

UniProt Q29205

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain J； UniProt 1–178 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain J 1–178（178 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain J 1–178（178 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7R Structure of the translating mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain J 1–178（178 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.90 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL11_PIG
Isoform —
PDB entities 13
Chains and sequence ranges Author chain J； PDBConstruct 1–178； UniProt 1–178

Ribosomal protein eL13

OrganismNot specified

UniProt I3LSD3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain L； UniProt 1–211 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain L 1–211（211 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name I3LSD3_PIG
Isoform —
PDB entities 14
Chains and sequence ranges Author chain L； PDBConstruct 1–211； UniProt 1–211

Ribosomal protein eL14

OrganismNot specified

UniProt A1XQU3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain M； UniProt 1–213 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain M 1–213（213 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain M 1–213（213 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7R Structure of the translating mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain M 1–213（213 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.90 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL14_PIG
Isoform —
PDB entities 15
Chains and sequence ranges Author chain M； PDBConstruct 1–213； UniProt 1–213

Ribosomal protein eL15

OrganismNot specified

UniProt I3LK33

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain N； UniProt 1–204 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain N 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name I3LK33_PIG
Isoform —
PDB entities 16
Chains and sequence ranges Author chain N； PDBConstruct 1–204； UniProt 1–204

Ribosomal protein uL13

OrganismNot specified

UniProt F1RI01

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain O； UniProt 1–204 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain O 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1RI01_PIG
Isoform —
PDB entities 17
Chains and sequence ranges Author chain O； PDBConstruct 1–204； UniProt 1–204

Ribosomal protein eL18

OrganismNot specified

UniProt I3L6F1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain Q； UniProt 1–188 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain Q 1–188（188 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name I3L6F1_PIG
Isoform —
PDB entities 19
Chains and sequence ranges Author chain Q； PDBConstruct 1–188； UniProt 1–188

Ribosomal protein eL19

OrganismNot specified

UniProt F2Z546

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain R； UniProt 1–196 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain R 1–196（196 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F2Z546_PIG
Isoform —
PDB entities 20
Chains and sequence ranges Author chain R； PDBConstruct 1–196； UniProt 1–196

Ribosomal protein eL20

OrganismNot specified

UniProt F1S935

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain S； UniProt 1–224 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain S 1–224（224 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1S935_PIG
Isoform —
PDB entities 21
Chains and sequence ranges Author chain S； PDBConstruct 1–224； UniProt 1–224

Ribosomal protein eL21

OrganismNot specified

UniProt F1RTJ9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain T； UniProt 1–160 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain T 1–160（160 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1RTJ9_PIG
Isoform —
PDB entities 22
Chains and sequence ranges Author chain T； PDBConstruct 1–160； UniProt 1–160

Ribosomal protein eL22

OrganismNot specified

UniProt P67985

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain U； UniProt 1–128 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain U 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain U 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7R Structure of the translating mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain U 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.90 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL22_PIG
Isoform —
PDB entities 23
Chains and sequence ranges Author chain U； PDBConstruct 1–128； UniProt 1–128

Ribosomal protein uL14

OrganismNot specified

UniProt P62831

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain V； UniProt 1–140 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain V 1–140（140 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL23_PIG
Isoform —
PDB entities 24
Chains and sequence ranges Author chain V； PDBConstruct 1–140； UniProt 1–140

Ribosomal protein uL23

OrganismNot specified

UniProt F2Z522

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain X； UniProt 1–156 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain X 1–156（156 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F2Z522_PIG
Isoform —
PDB entities 26
Chains and sequence ranges Author chain X； PDBConstruct 1–156； UniProt 1–156

Ribosomal protein uL24

OrganismNot specified

UniProt I3L7Y1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain Y； UniProt 1–145 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain Y 1–145（145 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name I3L7Y1_PIG
Isoform —
PDB entities 27
Chains and sequence ranges Author chain Y； PDBConstruct 1–145； UniProt 1–145

Ribosomal protein eL27

OrganismNot specified

UniProt A1XQU5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain Z； UniProt 1–136 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain Z 1–136（136 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain Z 1–136（136 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7R Structure of the translating mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain Z 1–136（136 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.90 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL27_PIG
Isoform —
PDB entities 28
Chains and sequence ranges Author chain Z； PDBConstruct 1–136； UniProt 1–136

Ribosomal protein uL15

OrganismNot specified

UniProt F1RGC0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain a； UniProt 1–148 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain a 1–148（148 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1RGC0_PIG
Isoform —
PDB entities 29
Chains and sequence ranges Author chain a； PDBConstruct 1–148； UniProt 1–148

Ribosomal protein eL29

OrganismNot specified

UniProt Q95281

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain b； UniProt 1–160 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain b 1–160（160 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain b 1–160（160 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7R Structure of the translating mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain b 1–160（160 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.90 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL29_PIG
Isoform —
PDB entities 30
Chains and sequence ranges Author chain b； PDBConstruct 1–160； UniProt 1–160

Ribosomal protein eL30

OrganismNot specified

UniProt F2Z554

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain c； UniProt 1–115 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain c 1–115（115 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F2Z554_PIG
Isoform —
PDB entities 31
Chains and sequence ranges Author chain c； PDBConstruct 1–115； UniProt 1–115

Ribosomal protein eL31

OrganismNot specified

UniProt P62901

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain d； UniProt 1–125 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain d 1–125（125 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain d 1–125（125 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7R Structure of the translating mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain d 1–125（125 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.90 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL31_PIG
Isoform —
PDB entities 32
Chains and sequence ranges Author chain d； PDBConstruct 1–125； UniProt 1–125

Ribosomal protein eL32

OrganismNot specified

UniProt Q6QAT0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain e； UniProt 1–135 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain e 1–135（135 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain e 1–135（135 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7R Structure of the translating mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain e 1–135（135 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.90 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL32_PIG
Isoform —
PDB entities 33
Chains and sequence ranges Author chain e； PDBConstruct 1–135； UniProt 1–135

Ribosomal protein eL33

OrganismNot specified

UniProt F2Z5Q8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain f； UniProt 1–110 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain f 1–110（110 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F2Z5Q8_PIG
Isoform —
PDB entities 34
Chains and sequence ranges Author chain f； PDBConstruct 1–110； UniProt 1–110

Ribosomal protein eL34

OrganismNot specified

UniProt F2Z5B9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain g； UniProt 1–117 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain g 1–117（117 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F2Z5B9_PIG
Isoform —
PDB entities 35
Chains and sequence ranges Author chain g； PDBConstruct 1–117； UniProt 1–117

Ribosomal protein uL29

OrganismNot specified

UniProt Q29361

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain h； UniProt 1–123 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain h 1–123（123 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain h 1–123（123 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7R Structure of the translating mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain h 1–123（123 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.90 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL35_PIG
Isoform —
PDB entities 36
Chains and sequence ranges Author chain h； PDBConstruct 1–123； UniProt 1–123

Ribosomal protein eL36

OrganismNot specified

UniProt F2Z5K6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain i； UniProt 1–105 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain i 1–105（105 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F2Z5K6_PIG
Isoform —
PDB entities 37
Chains and sequence ranges Author chain i； PDBConstruct 1–105； UniProt 1–105

Ribosomal protein eL38

OrganismNot specified

UniProt F2Z568

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain k； UniProt 1–70 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain k 1–70（70 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain k 1–70（70 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7R Structure of the translating mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain k 1–70（70 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.90 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F2Z568_PIG
Isoform —
PDB entities 39
Chains and sequence ranges Author chain k； PDBConstruct 1–70； UniProt 1–70

Ribosomal protein eL39

OrganismNot specified

UniProt K7GP63

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain l； UniProt 1–51 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain l 1–51（51 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name K7GP63_PIG
Isoform —
PDB entities 40
Chains and sequence ranges Author chain l； PDBConstruct 1–51； UniProt 1–51

Ribosomal protein eL40

OrganismNot specified

UniProt P63053

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain m； UniProt 1–128 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （P83884） Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain m 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain m 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7R Structure of the translating mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain m 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.90 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL40_PIG
Isoform —
PDB entities 41
Chains and sequence ranges Author chain m； PDBConstruct 1–128； UniProt 1–128

Ribosomal protein eL42

OrganismNot specified

UniProt P83884

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 42 RNA 3 PDB declaration: 45-meric（45） Consistent with all polymer counts Chain o； UniProt 1–106 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （F2Z567） Ribosomal protein uL3 × 1 Ribosomal protein uL4 × 1 Ribosomal protein uL18 × 1 （F1S530） Ribosomal protein eL6 × 1 Ribosomal protein uL30 × 1 Ribosomal protein eL8 × 1 （I3LVI8） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （I3LSD3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （I3LK33） Ribosomal protein uL13 × 1 （F1RI01） Ribosomal protein uL22 × 1 Ribosomal protein eL18 × 1 （I3L6F1） Ribosomal protein eL19 × 1 （F2Z546） Ribosomal protein eL20 × 1 （F1S935） Ribosomal protein eL21 × 1 （F1RTJ9） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （P62831） Ribosomal protein eL24 × 1 Ribosomal protein uL23 × 1 （F2Z522） Ribosomal protein uL24 × 1 （I3L7Y1） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （F1RGC0） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （F2Z554） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （F2Z5Q8） Ribosomal protein eL34 × 1 （F2Z5B9） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （F2Z5K6） Ribosomal protein eL37 × 1 Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （K7GP63） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL43 × 1 Ribosomal protein eL28 × 1 MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7O Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain o 1–106（106 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL36A_PIG
Isoform —
PDB entities 43
Chains and sequence ranges Author chain o； PDBConstruct 1–106； UniProt 1–106

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 3j7o

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 3j7o
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2. Structure Basics 2. Structure Basics

Entry ID entry_id3j7o
Deposition date deposition_date2014-08-01
Structure title titleStructure of the mammalian 60S ribosomal subunit
Keywords keywordsmammalian, RIBOSOME; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier78.54 Å
Radius of gyration Rg (electron density) rg_electron79.01 Å
Forward intensity I(0) i0124103000000.00
Molecular weight molecular_weight2026800.0 kDa
Excluded volume excluded_volume2133500 ų
Envelope volume envelope_volume3395500 ų
Hydration-shell volume shell_volume322860 ų
Envelope diameter envelope_diameter290.4 Å
Shell Rg shell_rg93.71 Å
Envelope Rg envelope_rg79.61 Å
Shape Rg shape_rg79.03 Å
Total Rg total_rg79.04 Å
Total atoms total_atoms136815
Residues n_residues10395
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 Å−1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3
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4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax204.3 Å
Rg (real space) rg_real76.09 Å
Rg uncertainty (real space) rg_real_error0.34 Å
I(0) (real space) i0_real1.1910e+11
I(0) uncertainty (real space) i0_real_error1.6950e+09
Rg (reciprocal space) rg_reciprocal79.32 Å
I(0) (reciprocal space) i0_reciprocal124400000000.0000
Solution quality estimate total_estimate0.9158
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary91.9 Å
Skewness Skewness skewness0.161
Kurtosis Kurtosis kurtosis-0.531
Angular range angular_range— – 0.1000 Å−1
Current regularization parameter α current_alpha0.4434
Highest regularization parameter α highest_alpha11430000000.0000
Real-space data points n_real_points21
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.991; Stabil: 0.983; Sysdev: 1.000; Positv: 1.000; Valcen: 0.983; Smooth: 0.000
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5. Crystallography and Experiment 5. Crystallography & Experiment

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6. Entities and Polymers Entities & Polymers (47)

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8. Citations (1)

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9. Files and Curves (10)