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3j7r

Structure of the translating mammalian ribosome-Sec61 complex

Method: ELECTRON MICROSCOPY Dmax: 240.0 Å Quality: EXCELLENT
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Ribosomal protein uL2

OrganismNot specified

UniProt A0A480Q387

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain A； UniProt 49–305 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain A 49–305（257 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480Q387_PIG
Isoform —
PDB entities 4
Chains and sequence ranges Author chain A； PDBConstruct 1–257； UniProt 49–305

Ribosomal protein uL3

OrganismNot specified

UniProt A0A480L253

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain B； UniProt 24–417 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain B 24–417（394 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480L253_PIG
Isoform —
PDB entities 5
Chains and sequence ranges Author chain B； PDBConstruct 1–394； UniProt 24–417

Ribosomal protein uL4

OrganismNot specified

UniProt A0A287AE76

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain C； UniProt 2–365 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain C 2–365（364 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A287AE76_PIG
Isoform —
PDB entities 6
Chains and sequence ranges Author chain C； PDBConstruct 1–367； UniProt 2–365

Ribosomal protein uL18

OrganismNot specified

UniProt A0A287ASD0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain D； UniProt 1–297 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain D 1–297（297 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A287ASD0_PIG
Isoform —
PDB entities 7
Chains and sequence ranges Author chain D； PDBConstruct 1–297； UniProt 1–297

Ribosomal protein eL6

OrganismNot specified

UniProt Q2YGT9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain E； UniProt 38–284 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain E 38–284（247 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL6_PIG
Isoform —
PDB entities 8
Chains and sequence ranges Author chain E； PDBConstruct 1–236； UniProt 38–284

Ribosomal protein uL30

OrganismNot specified

UniProt A0A480W0U3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain F； UniProt 26–250 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain F 26–250（225 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480W0U3_PIG
Isoform —
PDB entities 9
Chains and sequence ranges Author chain F； PDBConstruct 1–225； UniProt 26–250

Ribosomal protein eL8

OrganismNot specified

UniProt A0A4X1W808

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain G； UniProt 35–300 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain G 35–300（266 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A4X1W808_PIG
Isoform —
PDB entities 10
Chains and sequence ranges Author chain G； PDBConstruct 1–266； UniProt 35–300

Ribosomal protein uL6

OrganismNot specified

UniProt I3LP78

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain H； UniProt 1–192 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7O Structure of the mammalian 60S ribosomal subunit Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 45-meric
Chain H 1–192（192 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain H 1–192（192 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain H 1–192（192 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name I3LP78_PIG
Isoform —
PDB entities 11
Chains and sequence ranges Author chain H； PDBConstruct 1–192； UniProt 1–192

Ribosomal protein uL16

OrganismNot specified

UniProt Q29195

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain I； UniProt 2–214 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain I 2–214（213 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL10_PIG
Isoform —
PDB entities 12
Chains and sequence ranges Author chain I； PDBConstruct 1–213； UniProt 2–214

Ribosomal protein uL5

OrganismNot specified

UniProt Q29205

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain J； UniProt 1–178 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7O Structure of the mammalian 60S ribosomal subunit Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 45-meric
Chain J 1–178（178 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain J 1–178（178 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain J 1–178（178 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL11_PIG
Isoform —
PDB entities 13
Chains and sequence ranges Author chain J； PDBConstruct 1–178； UniProt 1–178

Ribosomal protein eL13

OrganismNot specified

UniProt A0A4X1TBV3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain L； UniProt 218–428 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain L 218–428（211 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A4X1TBV3_PIG
Isoform —
PDB entities 14
Chains and sequence ranges Author chain L； PDBConstruct 1–211； UniProt 218–428

Ribosomal protein eL14

OrganismNot specified

UniProt A1XQU3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain M； UniProt 1–213 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7O Structure of the mammalian 60S ribosomal subunit Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 45-meric
Chain M 1–213（213 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain M 1–213（213 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain M 1–213（213 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL14_PIG
Isoform —
PDB entities 15
Chains and sequence ranges Author chain M； PDBConstruct 1–213； UniProt 1–213

Ribosomal protein eL15

OrganismNot specified

UniProt A0A286ZL65

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain N； UniProt 1–204 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain N 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A286ZL65_PIG
Isoform —
PDB entities 16
Chains and sequence ranges Author chain N； PDBConstruct 1–204； UniProt 1–204

Ribosomal protein uL13

OrganismNot specified

UniProt A0A480L469

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain O； UniProt 98–296 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A480L469_PIG
Isoform —
PDB entities 17
Chains and sequence ranges Author chain O； PDBConstruct 1–201； UniProt 98–296

Ribosomal protein uL22

OrganismNot specified

UniProt A0A287B386

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain P； UniProt 2–154 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain P 2–154（153 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A287B386_PIG
Isoform —
PDB entities 18
Chains and sequence ranges Author chain P； PDBConstruct 1–153； UniProt 2–154

Ribosomal protein eL18

OrganismNot specified

UniProt A0A4X1W0N5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain Q； UniProt 1–188 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain Q 1–188（188 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A4X1W0N5_PIG
Isoform —
PDB entities 19
Chains and sequence ranges Author chain Q； PDBConstruct 1–188； UniProt 1–188

Ribosomal protein eL19

OrganismNot specified

UniProt A0A480VXS3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain R； UniProt 42–236 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain R 42–236（195 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480VXS3_PIG
Isoform —
PDB entities 20
Chains and sequence ranges Author chain R； PDBConstruct 2–196； UniProt 42–236

Ribosomal protein eL20

OrganismNot specified

UniProt A0A287APR1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain S； UniProt 1–224 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain S 1–224（224 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
6MTD Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) Deposited 2018-10-19 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 80 PDB declaration: 84-meric
Chain S 49–224（176 aa）
Not recorded MG MAGNESIUM ION × 297 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.30 Å
6MTE Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) Deposited 2018-10-19 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 83-meric
Chain S 49–224（176 aa）
Not recorded MG MAGNESIUM ION × 298 ZN ZINC ION × 8 GDP GUANOSINE-5'-DIPHOSPHATE × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
7NWG Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S. Deposited 2021-03-16 Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 86-meric
Chain S3 49–224（176 aa）
Not recorded MG MAGNESIUM ION × 299 BLS BLASTICIDIN S × 1 ZN ZINC ION × 8 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；50 mM HEPES pH 7.4 100 mM KOAc 5 mM Mg(Oac)2 1mM DTT
cryo-EM vitrification conditions Cryogen ETHANE；30s sample incubation on grid followed by 1.1s blotting time.
Resolution 3.80 Å
7NWH Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S. Deposited 2021-03-16 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 79 PDB declaration: 84-meric
Chain S 49–224（176 aa）
Not recorded ZN ZINC ION × 8 MG MAGNESIUM ION × 281 GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER × 1 BLS BLASTICIDIN S × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.4；50 mM HEPES pH 7.4 100 mM KOAc 5 mM Mg(Oac)2 1mM DTT
cryo-EM vitrification conditions Cryogen ETHANE；30s sample incubation on grid followed by 1.1s blotting time.
Resolution 4.10 Å
8RJB Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4 Deposited 2023-12-20 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 47 PDB declaration: 51-meric
Chain S 49–224（176 aa）
Not recorded MG MAGNESIUM ION × 218 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.69 Å
8RJC Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1 Deposited 2023-12-20 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 52 PDB declaration: 56-meric
Chain S 49–224（176 aa）
Not recorded MG MAGNESIUM ION × 218 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8RJD Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2 Deposited 2023-12-20 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 52 PDB declaration: 56-meric
Chain S 49–224（176 aa）
Not recorded MG MAGNESIUM ION × 218 ZN ZINC ION × 5 ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.79 Å

8 other PDB entries and 8 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A287APR1_PIG
Isoform —
PDB entities 21
Chains and sequence ranges Author chain S； PDBConstruct 1–224； UniProt 1–224

Ribosomal protein eL21

OrganismNot specified

UniProt P49666

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain T； UniProt 1–160 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain T 1–160（160 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL21_PIG
Isoform —
PDB entities 22
Chains and sequence ranges Author chain T； PDBConstruct 1–160； UniProt 1–160

Ribosomal protein eL22

OrganismNot specified

UniProt P67985

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain U； UniProt 1–128 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7O Structure of the mammalian 60S ribosomal subunit Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 45-meric
Chain U 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain U 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain U 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL22_PIG
Isoform —
PDB entities 23
Chains and sequence ranges Author chain U； PDBConstruct 1–128； UniProt 1–128

Ribosomal protein uL14

OrganismNot specified

UniProt A0A480VZZ1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain V； UniProt 1–140 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain V 1–140（140 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480VZZ1_PIG
Isoform —
PDB entities 24
Chains and sequence ranges Author chain V； PDBConstruct 1–140； UniProt 1–140

Ribosomal protein eL24

OrganismNot specified

UniProt A0A4X1SH42

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain W； UniProt 1–157 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain W 1–157（157 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A4X1SH42_PIG
Isoform —
PDB entities 25
Chains and sequence ranges Author chain W； PDBConstruct 1–157； UniProt 1–157

Ribosomal protein uL23

OrganismNot specified

UniProt A0A480KZ98

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain X； UniProt 56–211 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain X 56–211（156 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480KZ98_PIG
Isoform —
PDB entities 26
Chains and sequence ranges Author chain X； PDBConstruct 1–156； UniProt 56–211

Ribosomal protein uL24

OrganismNot specified

UniProt A0A4X1V977

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain Y； UniProt 1–145 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain Y 1–145（145 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A4X1V977_PIG
Isoform —
PDB entities 27
Chains and sequence ranges Author chain Y； PDBConstruct 1–145； UniProt 1–145

Ribosomal protein eL27

OrganismNot specified

UniProt A1XQU5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain Z； UniProt 1–136 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7O Structure of the mammalian 60S ribosomal subunit Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 45-meric
Chain Z 1–136（136 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain Z 1–136（136 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain Z 1–136（136 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL27_PIG
Isoform —
PDB entities 28
Chains and sequence ranges Author chain Z； PDBConstruct 1–136； UniProt 1–136

Ribosomal protein uL15

OrganismNot specified

UniProt A0A4X1SN08

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain a； UniProt 116–263 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain a 116–263（148 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A4X1SN08_PIG
Isoform —
PDB entities 29
Chains and sequence ranges Author chain a； PDBConstruct 1–148； UniProt 116–263

Ribosomal protein eL29

OrganismNot specified

UniProt Q95281

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain b； UniProt 1–160 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7O Structure of the mammalian 60S ribosomal subunit Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 45-meric
Chain b 1–160（160 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain b 1–160（160 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain b 1–160（160 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL29_PIG
Isoform —
PDB entities 30
Chains and sequence ranges Author chain b； PDBConstruct 1–160； UniProt 1–160

Ribosomal protein eL30

OrganismNot specified

UniProt A0A4X1TXJ8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain c； UniProt 1–115 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain c 1–115（115 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A4X1TXJ8_PIG
Isoform —
PDB entities 31
Chains and sequence ranges Author chain c； PDBConstruct 1–115； UniProt 1–115

Ribosomal protein eL31

OrganismNot specified

UniProt P62901

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain d； UniProt 1–125 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7O Structure of the mammalian 60S ribosomal subunit Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 45-meric
Chain d 1–125（125 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain d 1–125（125 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain d 1–125（125 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL31_PIG
Isoform —
PDB entities 32
Chains and sequence ranges Author chain d； PDBConstruct 1–125； UniProt 1–125

Ribosomal protein eL32

OrganismNot specified

UniProt Q6QAT0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain e； UniProt 1–135 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7O Structure of the mammalian 60S ribosomal subunit Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 45-meric
Chain e 1–135（135 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain e 1–135（135 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain e 1–135（135 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL32_PIG
Isoform —
PDB entities 33
Chains and sequence ranges Author chain e； PDBConstruct 1–135； UniProt 1–135

Ribosomal protein eL33

OrganismNot specified

UniProt A0A480KUB2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain f； UniProt 25–134 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain f 25–134（110 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480KUB2_PIG
Isoform —
PDB entities 34
Chains and sequence ranges Author chain f； PDBConstruct 1–110； UniProt 25–134

Ribosomal protein eL34

OrganismNot specified

UniProt Q29223

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain g； UniProt 1–117 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain g 1–117（117 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL34_PIG
Isoform —
PDB entities 35
Chains and sequence ranges Author chain g； PDBConstruct 1–117； UniProt 1–117

Ribosomal protein uL29

OrganismNot specified

UniProt Q29361

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain h； UniProt 1–123 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7O Structure of the mammalian 60S ribosomal subunit Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 45-meric
Chain h 1–123（123 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain h 1–123（123 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain h 1–123（123 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL35_PIG
Isoform —
PDB entities 36
Chains and sequence ranges Author chain h； PDBConstruct 1–123； UniProt 1–123

Ribosomal protein eL36

OrganismNot specified

UniProt A0A480QBP0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain i； UniProt 103–207 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain i 103–207（105 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480QBP0_PIG
Isoform —
PDB entities 37
Chains and sequence ranges Author chain i； PDBConstruct 1–105； UniProt 103–207

Ribosomal protein eL37

OrganismNot specified

UniProt A0A480UVT3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain j； UniProt 2–87 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain j 2–87（86 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480UVT3_PIG
Isoform —
PDB entities 38
Chains and sequence ranges Author chain j； PDBConstruct 1–86； UniProt 2–87

Ribosomal protein eL38

OrganismNot specified

UniProt F2Z568

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain k； UniProt 1–70 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7O Structure of the mammalian 60S ribosomal subunit Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 45-meric
Chain k 1–70（70 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain k 1–70（70 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain k 1–70（70 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F2Z568_PIG
Isoform —
PDB entities 39
Chains and sequence ranges Author chain k； PDBConstruct 1–70； UniProt 1–70

Ribosomal protein eL39

OrganismNot specified

UniProt A0A4X1VIM4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain l； UniProt 1–51 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain l 1–51（51 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A4X1VIM4_PIG
Isoform —
PDB entities 40
Chains and sequence ranges Author chain l； PDBConstruct 1–51； UniProt 1–51

Ribosomal protein eL40

OrganismNot specified

UniProt P63053

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain m； UniProt 1–128 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7O Structure of the mammalian 60S ribosomal subunit Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 42 PDB declaration: 45-meric
Chain m 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain m 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain m 1–128（128 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL40_PIG
Isoform —
PDB entities 41
Chains and sequence ranges Author chain m； PDBConstruct 1–128； UniProt 1–128

Ribosomal protein eL42

OrganismNot specified

UniProt A0A480LCM6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain o； UniProt 37–142 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain o 37–142（106 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480LCM6_PIG
Isoform —
PDB entities 43
Chains and sequence ranges Author chain o； PDBConstruct 1–106； UniProt 37–142

Ribosomal protein eL43

OrganismNot specified

UniProt A0A480WPS5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain p； UniProt 20–110 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain p 20–110（91 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480WPS5_PIG
Isoform —
PDB entities 44
Chains and sequence ranges Author chain p； PDBConstruct 1–91； UniProt 20–110

Ribosomal protein eL28

OrganismNot specified

UniProt A0A480YX24

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain r； UniProt 32–156 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain r 32–156（125 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480YX24_PIG
Isoform —
PDB entities 45
Chains and sequence ranges Author chain r； PDBConstruct 1–125； UniProt 32–156

Ribosomal protein uL1

OrganismNot specified

UniProt A0A480NYW2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain z； UniProt 31–247 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A480NYW2_PIG
Isoform —
PDB entities 46
Chains and sequence ranges Author chain z； PDBConstruct 1–217； UniProt 31–247

Sec61 alpha subunit

OrganismNot specified

UniProt A0A4X1TV07

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain 1； UniProt 25–466 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A4X1TV07_PIG
Isoform —
PDB entities 47
Chains and sequence ranges Author chain 1； PDBConstruct 1–393； UniProt 25–466

Sec61 gamma subunit

OrganismNot specified

UniProt A0A480WFL1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain 2； UniProt 1–68 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7Q Structure of the idle mammalian ribosome-Sec61 complex Deposited 2014-08-01 Different oligomeric state Different ligand/ion Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 45 PDB declaration: 48-meric
Chain 2 1–68（68 aa）
Not recorded MG MAGNESIUM ION × 130 ZN ZINC ION × 3 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.40 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A480WFL1_PIG
Isoform —
PDB entities 48
Chains and sequence ranges Author chain 2； PDBConstruct 1–68； UniProt 1–68

Ribosomal protein uS2

OrganismNot specified

UniProt Q4GWZ2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SA； UniProt 1–295 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain SA 1–295（295 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RSSA_PIG
Isoform —
PDB entities 51
Chains and sequence ranges Author chain SA； PDBConstruct 1–295； UniProt 1–295

Ribosomal protein eS1

OrganismNot specified

UniProt B6V8C8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SB； UniProt 1–264 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain SB 1–264（264 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name B6V8C8_PIG
Isoform —
PDB entities 52
Chains and sequence ranges Author chain SB； PDBConstruct 1–264； UniProt 1–264

Ribosomal protein uS5

OrganismNot specified

UniProt I3LJ87

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SC； UniProt 59–276 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name I3LJ87_PIG
Isoform —
PDB entities 53
Chains and sequence ranges Author chain SC； PDBConstruct 1–218； UniProt 59–276

Ribosomal protein uS3

OrganismNot specified

UniProt Q0Z8U2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SD； UniProt 1–243 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain SD 1–243（243 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS3_PIG
Isoform —
PDB entities 54
Chains and sequence ranges Author chain SD； PDBConstruct 1–243； UniProt 1–243

Ribosomal protein eS4

OrganismNot specified

UniProt A0A4X1W0I3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SE； UniProt 1–263 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A4X1W0I3_PIG
Isoform —
PDB entities 55
Chains and sequence ranges Author chain SE； PDBConstruct 1–263； UniProt 1–263

Ribosomal protein uS7

OrganismNot specified

UniProt F2Z5E6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SF； UniProt 1–204 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain SF 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F2Z5E6_PIG
Isoform —
PDB entities 56
Chains and sequence ranges Author chain SF； PDBConstruct 1–204； UniProt 1–204

Ribosomal protein eS6

OrganismNot specified

UniProt A0A480E3J4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SG； UniProt 59–307 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A480E3J4_PIG
Isoform —
PDB entities 57
Chains and sequence ranges Author chain SG； PDBConstruct 1–249； UniProt 59–307

Ribosomal protein eS7

OrganismNot specified

UniProt A0A287A9Y6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SH； UniProt 1–194 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A287A9Y6_PIG
Isoform —
PDB entities 58
Chains and sequence ranges Author chain SH； PDBConstruct 1–194； UniProt 1–194

Ribosomal protein eS8

OrganismNot specified

UniProt A0A480YST6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SI； UniProt 88–295 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A480YST6_PIG
Isoform —
PDB entities 59
Chains and sequence ranges Author chain SI； PDBConstruct 1–208； UniProt 88–295

Ribosomal protein uS4

OrganismNot specified

UniProt A0A480Q6G1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SJ； UniProt 83–276 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A480Q6G1_PIG
Isoform —
PDB entities 60
Chains and sequence ranges Author chain SJ； PDBConstruct 1–194； UniProt 83–276

Ribosomal protein eS10

OrganismNot specified

UniProt A0A480EHW2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SK； UniProt 146–310 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A480EHW2_PIG
Isoform —
PDB entities 61
Chains and sequence ranges Author chain SK； PDBConstruct 1–165； UniProt 146–310

Ribosomal protein uS17

OrganismNot specified

UniProt A0A480QMH2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SL； UniProt 66–223 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A480QMH2_PIG
Isoform —
PDB entities 62
Chains and sequence ranges Author chain SL； PDBConstruct 1–158； UniProt 66–223

Ribosomal protein eS12

OrganismNot specified

UniProt P46405

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SM； UniProt 9–132 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name RS12_PIG
Isoform —
PDB entities 63
Chains and sequence ranges Author chain SM； PDBConstruct 1–124； UniProt 9–132

Ribosomal protein uS15

OrganismNot specified

UniProt F6Q5P0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SN； UniProt 1–151 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name F6Q5P0_PIG
Isoform —
PDB entities 64
Chains and sequence ranges Author chain SN； PDBConstruct 1–151； UniProt 1–151

Ribosomal protein uS19

OrganismNot specified

UniProt P62844

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SP； UniProt 1–145 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain SP 1–145（145 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS15_PIG
Isoform —
PDB entities 66
Chains and sequence ranges Author chain SP； PDBConstruct 1–145； UniProt 1–145

Ribosomal protein uS9

OrganismNot specified

UniProt Q29201

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SQ； UniProt 1–146 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain SQ 1–146（146 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS16_PIG
Isoform —
PDB entities 67
Chains and sequence ranges Author chain SQ； PDBConstruct 1–146； UniProt 1–146

Ribosomal protein eS17

OrganismNot specified

UniProt Q6QAP7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SR； UniProt 1–135 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain SR 1–135（135 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS17_PIG
Isoform —
PDB entities 68
Chains and sequence ranges Author chain SR； PDBConstruct 1–135； UniProt 1–135

Ribosomal protein uS13

OrganismNot specified

UniProt P62272

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SS； UniProt 1–152 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain SS 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS18_PIG
Isoform —
PDB entities 69
Chains and sequence ranges Author chain SS； PDBConstruct 1–152； UniProt 1–152

Ribosomal protein eS19

OrganismNot specified

UniProt A0A4X1SDD8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain ST； UniProt 106–250 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A4X1SDD8_PIG
Isoform —
PDB entities 70
Chains and sequence ranges Author chain ST； PDBConstruct 1–145； UniProt 106–250

Ribosomal protein uS10

OrganismNot specified

UniProt A1XQU9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SU； UniProt 1–119 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain SU 1–119（119 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS20_PIG
Isoform —
PDB entities 71
Chains and sequence ranges Author chain SU； PDBConstruct 1–119； UniProt 1–119

Ribosomal protein eS21

OrganismNot specified

UniProt P63221

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SV； UniProt 1–83 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain SV 1–83（83 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS21_PIG
Isoform —
PDB entities 72
Chains and sequence ranges Author chain SV； PDBConstruct 1–83； UniProt 1–83

Ribosomal protein uS8

OrganismNot specified

UniProt A0A480KS86

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SW； UniProt 12–141 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A480KS86_PIG
Isoform —
PDB entities 73
Chains and sequence ranges Author chain SW； PDBConstruct 1–130； UniProt 12–141

Ribosomal protein uS12

OrganismNot specified

UniProt Q6SA96

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SX； UniProt 1–143 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain SX 1–143（143 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS23_PIG
Isoform —
PDB entities 74
Chains and sequence ranges Author chain SX； PDBConstruct 1–143； UniProt 1–143

Ribosomal protein eS24

OrganismNot specified

UniProt A0A4X1SJK8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SY； UniProt 1–132 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A4X1SJK8_PIG
Isoform —
PDB entities 75
Chains and sequence ranges Author chain SY； PDBConstruct 1–132； UniProt 1–132

Ribosomal protein es25

OrganismNot specified

UniProt A0A480V055

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain SZ； UniProt 76–200 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A480V055_PIG
Isoform —
PDB entities 76
Chains and sequence ranges Author chain SZ； PDBConstruct 1–125； UniProt 76–200

Ribosomal protein eS26

OrganismNot specified

UniProt P49171

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain Sa； UniProt 1–115 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain Sa 1–115（115 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS26_PIG
Isoform —
PDB entities 77
Chains and sequence ranges Author chain Sa； PDBConstruct 1–115； UniProt 1–115

Ribosomal protein eS27

OrganismNot specified

UniProt A0A287BF06

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain Sb； UniProt 1–84 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A287BF06_PIG
Isoform —
PDB entities 78
Chains and sequence ranges Author chain Sb； PDBConstruct 1–84； UniProt 1–84

Ribosomal protein eS28

OrganismNot specified

UniProt Q6QAT1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain Sc； UniProt 1–69 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain Sc 1–69（69 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS28_PIG
Isoform —
PDB entities 79
Chains and sequence ranges Author chain Sc； PDBConstruct 1–69； UniProt 1–69

Ribosomal protein uS14

OrganismNot specified

UniProt Q6QAP6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain Sd； UniProt 1–56 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain Sd 1–56（56 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RS29_PIG
Isoform —
PDB entities 80
Chains and sequence ranges Author chain Sd； PDBConstruct 1–56； UniProt 1–56

Ribosomal protein eS30

OrganismNot specified

UniProt A0A480W155

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain Se； UniProt 1–133 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A480W155_PIG
Isoform —
PDB entities 81
Chains and sequence ranges Author chain Se； PDBConstruct 1–133； UniProt 1–133

Ribosomal protein eS31

OrganismNot specified

UniProt A0A4X1W6H9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain Sf； UniProt 49–204 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein RACK1 × 1 （P63246） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A4X1W6H9_PIG
Isoform —
PDB entities 82
Chains and sequence ranges Author chain Sf； PDBConstruct 1–156； UniProt 49–204

Ribosomal protein RACK1

OrganismNot specified

UniProt P63246

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 79 RNA 7 PDB declaration: 86-meric（86） Consistent with all polymer counts Chain Sg； UniProt 1–317 Not recorded 28S ribosomal RNA × 1 5S ribosomal RNA × 1 5.8S ribosomal RNA × 1 Ribosomal protein uL2 × 1 （A0A480Q387） Ribosomal protein uL3 × 1 （A0A480L253） Ribosomal protein uL4 × 1 （A0A287AE76） Ribosomal protein uL18 × 1 （A0A287ASD0） Ribosomal protein eL6 × 1 （Q2YGT9） Ribosomal protein uL30 × 1 （A0A480W0U3） Ribosomal protein eL8 × 1 （A0A4X1W808） Ribosomal protein uL6 × 1 （I3LP78） Ribosomal protein uL16 × 1 （Q29195） Ribosomal protein uL5 × 1 （Q29205） Ribosomal protein eL13 × 1 （A0A4X1TBV3） Ribosomal protein eL14 × 1 （A1XQU3） Ribosomal protein eL15 × 1 （A0A286ZL65） Ribosomal protein uL13 × 1 （A0A480L469） Ribosomal protein uL22 × 1 （A0A287B386） Ribosomal protein eL18 × 1 （A0A4X1W0N5） Ribosomal protein eL19 × 1 （A0A480VXS3） Ribosomal protein eL20 × 1 （A0A287APR1） Ribosomal protein eL21 × 1 （P49666） Ribosomal protein eL22 × 1 （P67985） Ribosomal protein uL14 × 1 （A0A480VZZ1） Ribosomal protein eL24 × 1 （A0A4X1SH42） Ribosomal protein uL23 × 1 （A0A480KZ98） Ribosomal protein uL24 × 1 （A0A4X1V977） Ribosomal protein eL27 × 1 （A1XQU5） Ribosomal protein uL15 × 1 （A0A4X1SN08） Ribosomal protein eL29 × 1 （Q95281） Ribosomal protein eL30 × 1 （A0A4X1TXJ8） Ribosomal protein eL31 × 1 （P62901） Ribosomal protein eL32 × 1 （Q6QAT0） Ribosomal protein eL33 × 1 （A0A480KUB2） Ribosomal protein eL34 × 1 （Q29223） Ribosomal protein uL29 × 1 （Q29361） Ribosomal protein eL36 × 1 （A0A480QBP0） Ribosomal protein eL37 × 1 （A0A480UVT3） Ribosomal protein eL38 × 1 （F2Z568） Ribosomal protein eL39 × 1 （A0A4X1VIM4） Ribosomal protein eL40 × 1 （P63053） Ribosomal protein eL41 × 1 Ribosomal protein eL42 × 1 （A0A480LCM6） Ribosomal protein eL43 × 1 （A0A480WPS5） Ribosomal protein eL28 × 1 （A0A480YX24） Ribosomal protein uL1 × 1 （A0A480NYW2） Sec61 alpha subunit × 1 （A0A4X1TV07） Sec61 gamma subunit × 1 （A0A480WFL1） Sec61 beta subunit × 1 18S ribosomal RNA × 1 Ribosomal protein uS2 × 1 （Q4GWZ2） Ribosomal protein eS1 × 1 （B6V8C8） Ribosomal protein uS5 × 1 （I3LJ87） Ribosomal protein uS3 × 1 （Q0Z8U2） Ribosomal protein eS4 × 1 （A0A4X1W0I3） Ribosomal protein uS7 × 1 （F2Z5E6） Ribosomal protein eS6 × 1 （A0A480E3J4） Ribosomal protein eS7 × 1 （A0A287A9Y6） Ribosomal protein eS8 × 1 （A0A480YST6） Ribosomal protein uS4 × 1 （A0A480Q6G1） Ribosomal protein eS10 × 1 （A0A480EHW2） Ribosomal protein uS17 × 1 （A0A480QMH2） Ribosomal protein eS12 × 1 （P46405） Ribosomal protein uS15 × 1 （F6Q5P0） Ribosomal protein uS11 × 1 Ribosomal protein uS19 × 1 （P62844） Ribosomal protein uS9 × 1 （Q29201） Ribosomal protein eS17 × 1 （Q6QAP7） Ribosomal protein uS13 × 1 （P62272） Ribosomal protein eS19 × 1 （A0A4X1SDD8） Ribosomal protein uS10 × 1 （A1XQU9） Ribosomal protein eS21 × 1 （P63221） Ribosomal protein uS8 × 1 （A0A480KS86） Ribosomal protein uS12 × 1 （Q6SA96） Ribosomal protein eS24 × 1 （A0A4X1SJK8） Ribosomal protein es25 × 1 （A0A480V055） Ribosomal protein eS26 × 1 （P49171） Ribosomal protein eS27 × 1 （A0A287BF06） Ribosomal protein eS28 × 1 （Q6QAT1） Ribosomal protein uS14 × 1 （Q6QAP6） Ribosomal protein eS30 × 1 （A0A480W155） Ribosomal protein eS31 × 1 （A0A4X1W6H9） Messenger RNA × 1 A/P tRNA × 1 P/E tRNA × 1 MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY cryo-EM buffer：50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin cryo-EM vitrification conditions：120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV). Resolution 3.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 3J7R Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
3J7P Structure of the 80S mammalian ribosome bound to eEF2 Deposited 2014-08-01 Different oligomeric state Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 78 PDB declaration: 82-meric
Chain Sg 1–317（317 aa）
Not recorded MG MAGNESIUM ION × 166 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer 50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin；pH 7.5；50 mM HEPES, 200 mM potassium acetate, 15 mM magnesium acetate, 1 mM DTT, 0.25% Digitonin
cryo-EM vitrification conditions 120 K；Cryogen ETHANE；3 uL sample was incubated on the grid for 30 seconds and blotted for 9 seconds before being plunged into liquid ethane (FEI VITROBOT MARK IV).
Resolution 3.50 Å

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RACK1_PIG
Isoform —
PDB entities 83
Chains and sequence ranges Author chain Sg； PDBConstruct 1–317； UniProt 1–317

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 3j7r

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 3j7r
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2. Structure Basics 2. Structure Basics

Entry ID entry_id3j7r
Deposition date deposition_date2014-08-01
Structure title titleStructure of the translating mammalian ribosome-Sec61 complex
Keywords keywordsmammalian, Sec61, translocation, translation, RIBOSOME; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier94.00 Å
Radius of gyration Rg (electron density) rg_electron95.35 Å
Forward intensity I(0) i0306840000000.00
Molecular weight molecular_weight3283600.0 kDa
Excluded volume excluded_volume3512200 ų
Envelope volume envelope_volume5841300 ų
Hydration-shell volume shell_volume461740 ų
Envelope diameter envelope_diameter318.8 Å
Shell Rg shell_rg112.50 Å
Envelope Rg envelope_rg94.65 Å
Shape Rg shape_rg95.43 Å
Total Rg total_rg95.23 Å
Total atoms total_atoms222335
Residues n_residues17883
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 Å−1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3
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4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax240.0 Å
Rg (real space) rg_real91.26 Å
Rg uncertainty (real space) rg_real_error0.36 Å
I(0) (real space) i0_real2.9440e+11
I(0) uncertainty (real space) i0_real_error4.7600e+09
Rg (reciprocal space) rg_reciprocal95.73 Å
I(0) (reciprocal space) i0_reciprocal308600000000.0000
Solution quality estimate total_estimate0.9152
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary113.0 Å
Skewness Skewness skewness0.113
Kurtosis Kurtosis kurtosis-0.599
Angular range angular_range— – 0.0850 Å−1
Current regularization parameter α current_alpha0.6065
Highest regularization parameter α highest_alpha21120000000.0000
Real-space data points n_real_points18
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.997; Stabil: 0.979; Sysdev: 1.000; Positv: 1.000; Valcen: 0.977; Smooth: 0.000
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5. Crystallography and Experiment 5. Crystallography & Experiment

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6. Entities and Polymers Entities & Polymers (88)

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8. Citations (1)

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9. Files and Curves (10)