3lde

High resolution open MthK pore structure crystallized in 100 mM K+ and further soaked in 100 mM Na+.

Method: X-RAY DIFFRACTION Dmax: 50.0 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Calcium-gated potassium channel mthK

Methanothermobacter thermautotrophicus

UniProt O27564

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 18–99 Fragment:MthK K+ channel, residues 28-99 Mutation:S68H, V77C NA SODIUM ION × 16 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;3.0-3.5 M 1,6-Hexandiol, 100 mM HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K Resolution 2.21 Å R-free 0.208

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

47 other PDB entries and 76 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MTHK_METTH
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–82; UniProt 18–99

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 3lde

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 3lde
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2. Structure Basics 2. Structure Basics

Entry ID entry_id3lde
Deposition date deposition_date2010-01-12
Structure title titleHigh resolution open MthK pore structure crystallized in 100 mM K+ and further soaked in 100 mM Na+.
Keywords keywords;transmembrane, ion channel, open conformation, potassium, ion transport, Alternative initiation, Cell membrane, Ionic channel, Membrane, Metal-binding, Potassium transport, Transport, TRANSPORT PROTEIN ;; TRANSPORT PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier14.34
Radius of gyration Rg (electron density) rg_electron13.45
Forward intensity I(0) i01315230.00
Molecular weight molecular_weight9103.0 kDa
Excluded volume excluded_volume11989 ų
Envelope volume envelope_volume13074 ų
Hydration-shell volume shell_volume8928 ų
Envelope diameter envelope_diameter48.7
Shell Rg shell_rg18.05
Envelope Rg envelope_rg13.87
Shape Rg shape_rg13.42
Total Rg total_rg14.81
Total atoms total_atoms644
Residues n_residues82
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax50.0
Rg (real space) rg_real14.42
Rg uncertainty (real space) rg_real_error0.37
I(0) (real space) i0_real1.3150e+06
I(0) uncertainty (real space) i0_real_error1.5860e+04
Rg (reciprocal space) rg_reciprocal14.41
I(0) (reciprocal space) i0_reciprocal1315000.0000
Solution quality estimate total_estimate0.8334
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary14.6
Skewness Skewness skewness0.448
Kurtosis Kurtosis kurtosis-0.303
Angular range angular_range— – 0.5000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha174000.0000
Real-space data points n_real_points80
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.679; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.807; Smooth: 0.987

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id3ldeA00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology287 — Helix Hairpins
Homologous superfamily homologous superfamily70

8. Citations (1)

9. Files and Curves (10)