6oly

Full-length MthK channel at 3.1 angstrom resolution

Method: X-RAY DIFFRACTION Dmax: 134.1 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Calcium-gated potassium channel MthK

Methanothermobacter thermautotrophicus

UniProt O27564

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 8 PDB declaration: octameric(8) Consistent with protein copy count Chain A; UniProt 1–336 Chain B; UniProt 1–336 Chain C; UniProt 1–336 Chain D; UniProt 1–336 Mutation:M107I CA CALCIUM ION × 24 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;300 K;28% PEG350-MME, 0.1M MES pH 6.5, 0.2 M CaCl2 Resolution 3.11 Å R-free 0.275

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

47 other PDB entries and 76 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MTHK_METTH
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–336; UniProt 1–336 Author chain B; PDBConstruct 1–336; UniProt 1–336 Author chain C; PDBConstruct 1–336; UniProt 1–336 Author chain D; PDBConstruct 1–336; UniProt 1–336

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 6oly

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 6oly
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2. Structure Basics 2. Structure Basics

Entry ID entry_id6oly
Deposition date deposition_date2019-04-17
Structure title titleFull-length MthK channel at 3.1 angstrom resolution
Keywords keywordspotassium channel, calcium-binding, RCK domain, rossmann fold, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier45.68
Radius of gyration Rg (electron density) rg_electron45.19
Forward intensity I(0) i0256421000.00
Molecular weight molecular_weight124550.0 kDa
Excluded volume excluded_volume153350 ų
Envelope volume envelope_volume268550 ų
Hydration-shell volume shell_volume51455 ų
Envelope diameter envelope_diameter141.4
Shell Rg shell_rg48.17
Envelope Rg envelope_rg42.97
Shape Rg shape_rg45.27
Total Rg total_rg45.08
Total atoms total_atoms8757
Residues n_residues1257
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax134.1
Rg (real space) rg_real45.42
Rg uncertainty (real space) rg_real_error0.71
I(0) (real space) i0_real2.5640e+08
I(0) uncertainty (real space) i0_real_error4.0600e+06
Rg (reciprocal space) rg_reciprocal45.68
I(0) (reciprocal space) i0_reciprocal256500000.0000
Solution quality estimate total_estimate0.8669
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary69.0
Skewness Skewness skewness0.006
Kurtosis Kurtosis kurtosis-0.430
Angular range angular_range— – 0.1750 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha12770000.0000
Real-space data points n_real_points36
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.919; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.986; Smooth: 0.521

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id6olyA01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1450 — Regulator of K+ conductance, C-terminal domain
Domain ID domain_id6olyB01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1450 — Regulator of K+ conductance, C-terminal domain
Domain ID domain_id6olyC01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1450 — Regulator of K+ conductance, C-terminal domain
Domain ID domain_id6olyD01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily1450 — Regulator of K+ conductance, C-terminal domain

8. Citations (1)

9. Files and Curves (10)