4y5z

T=1 capsid structure of SeMV Ndel65CP fused with B-domain of S. aureus protein SpA at the N-terminus (P1 crystal form)

Method: X-RAY DIFFRACTION D_max: 188.3 Å Quality: GOOD

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Immunoglobulin G-binding protein A,Coat protein

Sesbania mosaic virus

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Insufficient information Homooligomer Protein × 60 PDB declaration: 60-meric（60） Consistent with protein copy count	Chain 0； UniProt 158–211 Chain 1； UniProt 158–211 Chain 2； UniProt 158–211 Chain 3； UniProt 158–211 Chain 4； UniProt 158–211 Chain 5； UniProt 158–211 Chain 6； UniProt 158–211 Chain 7； UniProt 158–211 Chain A； UniProt 158–211 Chain B； UniProt 158–211 Chain C； UniProt 158–211 Chain D； UniProt 158–211 Chain E； UniProt 158–211 Chain F； UniProt 158–211 Chain G； UniProt 158–211 Chain H； UniProt 158–211 Chain I； UniProt 158–211 Chain J； UniProt 158–211 Chain K； UniProt 158–211 Chain L； UniProt 158–211 Chain M； UniProt 158–211 Chain N； UniProt 158–211 Chain O； UniProt 158–211 Chain P； UniProt 158–211 Chain Q； UniProt 158–211 Chain R； UniProt 158–211 Chain S； UniProt 158–211 Chain T； UniProt 158–211 Chain U； UniProt 158–211 Chain V； UniProt 158–211 Chain W； UniProt 158–211 Chain X； UniProt 158–211 Chain Y； UniProt 158–211 Chain Z； UniProt 158–211 Chain a； UniProt 158–211 Chain b； UniProt 158–211 Chain c； UniProt 158–211 Chain d； UniProt 158–211 Chain e； UniProt 158–211 Chain f； UniProt 158–211 Chain g； UniProt 158–211 Chain h； UniProt 158–211 Chain i； UniProt 158–211 Chain j； UniProt 158–211 Chain k； UniProt 158–211 Chain l； UniProt 158–211 Chain m； UniProt 158–211 Chain n； UniProt 158–211 Chain o； UniProt 158–211 Chain p； UniProt 158–211 Chain q； UniProt 158–211 Chain r； UniProt 158–211 Chain s； UniProt 158–211 Chain t； UniProt 158–211 Chain u； UniProt 158–211 Chain v； UniProt 158–211 Chain w； UniProt 158–211 Chain x； UniProt 158–211 Chain y； UniProt 158–211 Chain z； UniProt 158–211	Fragment：UNP RESIDUES 158-211,UNP RESIDUES 66-268	SO4 SULFATE ION × 12	X-RAY DIFFRACTION X-ray crystallization conditions：VAPOR DIFFUSION, HANGING DROP；pH 7.5；295 K；15-25% PEG 400, 0.2M magnesium chloride, 0.1M HEPES	Resolution 2.95 Å R-free 0.249

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB	Difference from Current Entry 4Y5Z	Assembly / Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Non-polymers	Method and Experimental Conditions	Structure Quality
1DEE Structure of S. aureus protein A bound to a human IgM Fab Deposited 1999-11-15	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric	Chain G 100–153（54 aa） Fragment：RECOMBINANT DOMAIN D	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 6.5；293 K；MPEG 5000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K	Resolution 2.70 Å R-free 0.281
1DEE Structure of S. aureus protein A bound to a human IgM Fab Deposited 1999-11-15	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 3 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric	Chain H 100–153（54 aa） Fragment：RECOMBINANT DOMAIN D	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 6.5；293 K；MPEG 5000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K	Resolution 2.70 Å R-free 0.281
1FC2 Crystallographic Refinement and Atomic Models of a Human FC Fragment and its Complex with Fragment B of Protein A from Staphylococcus Aureus at 2.9-and 2.8-Angstroms Resolution Deposited 1981-05-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Other combination Heteromer；Protein × 4 PDB declaration: tetrameric	Chain C 212–269（58 aa）	Not recorded	SO4 SULFATE ION × 2	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 2.80 Å
1H0T An affibody in complex with a target protein: structure and coupled folding Deposited 2002-06-27	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric	Chain A 213–269（57 aa） Fragment：RESIDUES 213-269	Not recorded	No recorded non-water small molecule	SOLUTION NMR NMR measurement conditions pH 5.6；303 K；Pressure 1	Resolution not provided
4Y4Y T=1 capsid structure of SeMV Ndel65CP fused with B-domain of S. aureus protein SpA at the N-terminus (C2 crystal form) Deposited 2015-02-11	Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics	Assembly 1 Insufficient information Homooligomer；Protein × 60 PDB declaration: 60-meric	Chain A 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain B 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain C 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain D 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain E 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain F 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain G 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain H 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain I 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain J 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain K 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain L 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain M 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain N 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain O 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain P 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain Q 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain R 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain S 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain T 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain U 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain V 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain W 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain X 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain Y 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain Z 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain a 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain b 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain c 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain d 158–211（54 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268	Not recorded	SO4 SULFATE ION × 12	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；295 K；15-20% PEG 4000, 5% Iso-propanol, 100 mM Sodium citrate	Resolution 3.00 Å R-free 0.200
9BDE Middle Region of Apolipoprotein B 100 bound to Low Density Lipoprotein Receptor Deposited 2024-04-11	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics	Assembly 1 Insufficient information Heteromer；Protein × 6 PDB declaration: hexameric	Chain B 278–327（50 aa） Fragment：;residues 27-384 (Uniprot numbering),residues 278-327 (Uniprot numbering),103-151 (Uniprot numbering),residues 440-497 (Uniprot numbering) ; Chain B 103–151（49 aa） Fragment：;residues 27-384 (Uniprot numbering),residues 278-327 (Uniprot numbering),103-151 (Uniprot numbering),residues 440-497 (Uniprot numbering) ;	Not recorded	NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 5 CA CALCIUM ION × 7	ELECTRON MICROSCOPY cryo-EM buffer pH 7.4 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 4.18 Å
9HXS CS-ROSETTA Structure of the Z Domain of the IgG-Binding Staphylococcal Protein A Deposited 2025-01-08	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics	Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric	Chain A 212–269（58 aa）	Not recorded	No recorded non-water small molecule	SOLUTION NMR NMR measurement conditions pH 6；298 K；Ionic strength (raw mmCIF value) 150；Pressure 1 NMR sample composition 2 mg/mL [U-100% 13C; U-100% 15N] Protein Z, 25 mM MES, 1 mM CaCl2, 93% H2O/7% D2O \| 93% H2O/7% D2O	Resolution not provided
9M5D Crystal structure of S. aureus protein A bound to a human single-domain antibody Deposited 2025-03-05	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric	Chain B 93–153（61 aa） Chain H 93–153（61 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；293 K；25% w/v Polyethylene glycol 3350, 0.2M Magnesium chloride and 0.1M BIS-Tris 5.5	Resolution 3.57 Å R-free 0.271
9M6J Crystal structure of S. aureus protein A bound to a camelid single-domain antibody Deposited 2025-03-07	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric	Chain H 93–153（61 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；293 K；2.0 M Ammonium sulfate	Resolution 2.00 Å R-free 0.226
9M6O Crystal structure of S. aureus protein A bound to a camelid single-domain antibody Deposited 2025-03-07	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric	Chain H 93–153（61 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；293 K；25% w/v Polyethylene glycol 3350 and 0.1M Citric acid 3.5	Resolution 1.49 Å R-free 0.257
9M6O Crystal structure of S. aureus protein A bound to a camelid single-domain antibody Deposited 2025-03-07	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric	Chain A 93–153（61 aa）	Not recorded	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；293 K；25% w/v Polyethylene glycol 3350 and 0.1M Citric acid 3.5	Resolution 1.49 Å R-free 0.257
9QBJ Legobody dimer Deposited 2025-03-03	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics	Assembly 1 Insufficient information Heteromer；Protein × 8 PDB declaration: octameric	Chain I 295–321（27 aa） Chain J 295–321（27 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 7.5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.20 Å

10 other PDB entries and 12 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence

UniProt name	SPA_STAA8
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain 0； PDBConstruct 19–72； UniProt 158–211 Author chain 1； PDBConstruct 19–72； UniProt 158–211 Author chain 2； PDBConstruct 19–72； UniProt 158–211 Author chain 3； PDBConstruct 19–72； UniProt 158–211 Author chain 4； PDBConstruct 19–72； UniProt 158–211 Author chain 5； PDBConstruct 19–72； UniProt 158–211 Author chain 6； PDBConstruct 19–72； UniProt 158–211 Author chain 7； PDBConstruct 19–72； UniProt 158–211 Author chain A； PDBConstruct 19–72； UniProt 158–211 Author chain B； PDBConstruct 19–72； UniProt 158–211 Author chain C； PDBConstruct 19–72； UniProt 158–211 Author chain D； PDBConstruct 19–72； UniProt 158–211 Author chain E； PDBConstruct 19–72； UniProt 158–211 Author chain F； PDBConstruct 19–72； UniProt 158–211 Author chain G； PDBConstruct 19–72； UniProt 158–211 Author chain H； PDBConstruct 19–72； UniProt 158–211 Author chain I； PDBConstruct 19–72； UniProt 158–211 Author chain J； PDBConstruct 19–72； UniProt 158–211 Author chain K； PDBConstruct 19–72； UniProt 158–211 Author chain L； PDBConstruct 19–72； UniProt 158–211 Author chain M； PDBConstruct 19–72； UniProt 158–211 Author chain N； PDBConstruct 19–72； UniProt 158–211 Author chain O； PDBConstruct 19–72； UniProt 158–211 Author chain P； PDBConstruct 19–72； UniProt 158–211 Author chain Q； PDBConstruct 19–72； UniProt 158–211 Author chain R； PDBConstruct 19–72； UniProt 158–211 Author chain S； PDBConstruct 19–72； UniProt 158–211 Author chain T； PDBConstruct 19–72； UniProt 158–211 Author chain U； PDBConstruct 19–72； UniProt 158–211 Author chain V； PDBConstruct 19–72； UniProt 158–211 Author chain W； PDBConstruct 19–72； UniProt 158–211 Author chain X； PDBConstruct 19–72； UniProt 158–211 Author chain Y； PDBConstruct 19–72； UniProt 158–211 Author chain Z； PDBConstruct 19–72； UniProt 158–211 Author chain a； PDBConstruct 19–72； UniProt 158–211 Author chain b； PDBConstruct 19–72； UniProt 158–211 Author chain c； PDBConstruct 19–72； UniProt 158–211 Author chain d； PDBConstruct 19–72； UniProt 158–211 Author chain e； PDBConstruct 19–72； UniProt 158–211 Author chain f； PDBConstruct 19–72； UniProt 158–211 Author chain g； PDBConstruct 19–72； UniProt 158–211 Author chain h； PDBConstruct 19–72； UniProt 158–211 Author chain i； PDBConstruct 19–72； UniProt 158–211 Author chain j； PDBConstruct 19–72； UniProt 158–211 Author chain k； PDBConstruct 19–72； UniProt 158–211 Author chain l； PDBConstruct 19–72； UniProt 158–211 Author chain m； PDBConstruct 19–72； UniProt 158–211 Author chain n； PDBConstruct 19–72； UniProt 158–211 Author chain o； PDBConstruct 19–72； UniProt 158–211 Author chain p； PDBConstruct 19–72； UniProt 158–211 Author chain q； PDBConstruct 19–72； UniProt 158–211 Author chain r； PDBConstruct 19–72； UniProt 158–211 Author chain s； PDBConstruct 19–72； UniProt 158–211 Author chain t； PDBConstruct 19–72； UniProt 158–211 Author chain u； PDBConstruct 19–72； UniProt 158–211 Author chain v； PDBConstruct 19–72； UniProt 158–211 Author chain w； PDBConstruct 19–72； UniProt 158–211 Author chain x； PDBConstruct 19–72； UniProt 158–211 Author chain y； PDBConstruct 19–72； UniProt 158–211 Author chain z； PDBConstruct 19–72； UniProt 158–211

Immunoglobulin G-binding protein A,Coat protein

Sesbania mosaic virus

UniProt Q9EB06

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Insufficient information Homooligomer Protein × 60 PDB declaration: 60-meric（60） Consistent with protein copy count	Chain 0； UniProt 66–268 Chain 1； UniProt 66–268 Chain 2； UniProt 66–268 Chain 3； UniProt 66–268 Chain 4； UniProt 66–268 Chain 5； UniProt 66–268 Chain 6； UniProt 66–268 Chain 7； UniProt 66–268 Chain A； UniProt 66–268 Chain B； UniProt 66–268 Chain C； UniProt 66–268 Chain D； UniProt 66–268 Chain E； UniProt 66–268 Chain F； UniProt 66–268 Chain G； UniProt 66–268 Chain H； UniProt 66–268 Chain I； UniProt 66–268 Chain J； UniProt 66–268 Chain K； UniProt 66–268 Chain L； UniProt 66–268 Chain M； UniProt 66–268 Chain N； UniProt 66–268 Chain O； UniProt 66–268 Chain P； UniProt 66–268 Chain Q； UniProt 66–268 Chain R； UniProt 66–268 Chain S； UniProt 66–268 Chain T； UniProt 66–268 Chain U； UniProt 66–268 Chain V； UniProt 66–268 Chain W； UniProt 66–268 Chain X； UniProt 66–268 Chain Y； UniProt 66–268 Chain Z； UniProt 66–268 Chain a； UniProt 66–268 Chain b； UniProt 66–268 Chain c； UniProt 66–268 Chain d； UniProt 66–268 Chain e； UniProt 66–268 Chain f； UniProt 66–268 Chain g； UniProt 66–268 Chain h； UniProt 66–268 Chain i； UniProt 66–268 Chain j； UniProt 66–268 Chain k； UniProt 66–268 Chain l； UniProt 66–268 Chain m； UniProt 66–268 Chain n； UniProt 66–268 Chain o； UniProt 66–268 Chain p； UniProt 66–268 Chain q； UniProt 66–268 Chain r； UniProt 66–268 Chain s； UniProt 66–268 Chain t； UniProt 66–268 Chain u； UniProt 66–268 Chain v； UniProt 66–268 Chain w； UniProt 66–268 Chain x； UniProt 66–268 Chain y； UniProt 66–268 Chain z； UniProt 66–268	Fragment：UNP RESIDUES 158-211,UNP RESIDUES 66-268	SO4 SULFATE ION × 12	X-RAY DIFFRACTION X-ray crystallization conditions：VAPOR DIFFUSION, HANGING DROP；pH 7.5；295 K；15-25% PEG 400, 0.2M magnesium chloride, 0.1M HEPES	Resolution 2.95 Å R-free 0.249

Other States of the Same Protein in the Database

Other PDB	Difference from Current Entry 4Y5Z	Assembly / Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Non-polymers	Method and Experimental Conditions	Structure Quality
1SMV PRIMARY STRUCTURE OF SESBANIA MOSAIC VIRUS COAT PROTEIN: ITS IMPLICATIONS TO THE ASSEMBLY AND ARCHITECTURE OF THE VIRUS Deposited 1995-06-16	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 180 PDB declaration: complete icosahedral assembly	Chain A 5–267（263 aa） Chain B 5–267（263 aa） Chain C 5–267（263 aa）	Not recorded	CA CALCIUM ION × 240	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.00 Å
1SMV PRIMARY STRUCTURE OF SESBANIA MOSAIC VIRUS COAT PROTEIN: ITS IMPLICATIONS TO THE ASSEMBLY AND ARCHITECTURE OF THE VIRUS Deposited 1995-06-16	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 2 Protein homooligomer Homooligomer；Protein × 3 PDB declaration: trimeric	Chain A 5–267（263 aa） Chain B 5–267（263 aa） Chain C 5–267（263 aa）	Not recorded	CA CALCIUM ION × 4	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.00 Å
1SMV PRIMARY STRUCTURE OF SESBANIA MOSAIC VIRUS COAT PROTEIN: ITS IMPLICATIONS TO THE ASSEMBLY AND ARCHITECTURE OF THE VIRUS Deposited 1995-06-16	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 3 Protein homooligomer Homooligomer；Protein × 15 PDB declaration: pentadecameric	Chain A 5–267（263 aa） Chain B 5–267（263 aa） Chain C 5–267（263 aa）	Not recorded	CA CALCIUM ION × 20	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.00 Å
1SMV PRIMARY STRUCTURE OF SESBANIA MOSAIC VIRUS COAT PROTEIN: ITS IMPLICATIONS TO THE ASSEMBLY AND ARCHITECTURE OF THE VIRUS Deposited 1995-06-16	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 4 Protein homooligomer Homooligomer；Protein × 18 PDB declaration: octadecameric	Chain A 5–267（263 aa） Chain B 5–267（263 aa） Chain C 5–267（263 aa）	Not recorded	CA CALCIUM ION × 24	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.00 Å
1SMV PRIMARY STRUCTURE OF SESBANIA MOSAIC VIRUS COAT PROTEIN: ITS IMPLICATIONS TO THE ASSEMBLY AND ARCHITECTURE OF THE VIRUS Deposited 1995-06-16	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 5 Protein homooligomer Homooligomer；Protein × 3 PDB declaration: trimeric	Chain A 5–267（263 aa） Chain B 5–267（263 aa） Chain C 5–267（263 aa）	Not recorded	CA CALCIUM ION × 4	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.00 Å
1SMV PRIMARY STRUCTURE OF SESBANIA MOSAIC VIRUS COAT PROTEIN: ITS IMPLICATIONS TO THE ASSEMBLY AND ARCHITECTURE OF THE VIRUS Deposited 1995-06-16	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 6 Protein homooligomer Homooligomer；Protein × 60 PDB declaration: 60-meric	Chain A 5–267（263 aa） Chain B 5–267（263 aa） Chain C 5–267（263 aa）	Not recorded	CA CALCIUM ION × 80	X-RAY DIFFRACTION mmCIF provides none of the parsed conditions	Resolution 3.00 Å
1VAK T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65 Deposited 2004-02-18	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 60 PDB declaration: complete icosahedral assembly	Chain A 66–268（203 aa） Fragment：residues 66-268	Not recorded	CA CALCIUM ION × 60	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；PEG 3350, magnesium chloride, isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K	Resolution 3.05 Å R-free 0.214
1VAK T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65 Deposited 2004-02-18	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric	Chain A 66–268（203 aa） Fragment：residues 66-268	Not recorded	CA CALCIUM ION × 1	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；PEG 3350, magnesium chloride, isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K	Resolution 3.05 Å R-free 0.214
1VAK T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65 Deposited 2004-02-18	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 3 Protein homooligomer Homooligomer；Protein × 5 PDB declaration: pentameric	Chain A 66–268（203 aa） Fragment：residues 66-268	Not recorded	CA CALCIUM ION × 5	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；PEG 3350, magnesium chloride, isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K	Resolution 3.05 Å R-free 0.214
1VAK T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65 Deposited 2004-02-18	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 4 Protein homooligomer Homooligomer；Protein × 6 PDB declaration: hexameric	Chain A 66–268（203 aa） Fragment：residues 66-268	Not recorded	CA CALCIUM ION × 6	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；PEG 3350, magnesium chloride, isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K	Resolution 3.05 Å R-free 0.214
1VAK T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65 Deposited 2004-02-18	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 5 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric	Chain A 66–268（203 aa） Fragment：residues 66-268	Not recorded	CA CALCIUM ION × 1	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；PEG 3350, magnesium chloride, isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K	Resolution 3.05 Å R-free 0.214
1VAK T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65 Deposited 2004-02-18	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 6 Protein homooligomer Homooligomer；Protein × 60 PDB declaration: 60-meric	Chain A 66–268（203 aa） Fragment：residues 66-268	Not recorded	CA CALCIUM ION × 60	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；293 K；PEG 3350, magnesium chloride, isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K	Resolution 3.05 Å R-free 0.214
1VB2 T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65-D146N-D149N Deposited 2004-02-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 60 PDB declaration: complete icosahedral assembly	Chain A 66–268（203 aa） Fragment：residues 66-268	Mutation：D146N/D149N	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；290 K；PEG 3350, Magnesium Chloride, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K	Resolution 3.40 Å R-free 0.261
1VB2 T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65-D146N-D149N Deposited 2004-02-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric	Chain A 66–268（203 aa） Fragment：residues 66-268	Mutation：D146N/D149N	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；290 K；PEG 3350, Magnesium Chloride, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K	Resolution 3.40 Å R-free 0.261
1VB2 T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65-D146N-D149N Deposited 2004-02-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 3 Protein homooligomer Homooligomer；Protein × 5 PDB declaration: pentameric	Chain A 66–268（203 aa） Fragment：residues 66-268	Mutation：D146N/D149N	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；290 K；PEG 3350, Magnesium Chloride, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K	Resolution 3.40 Å R-free 0.261
1VB2 T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65-D146N-D149N Deposited 2004-02-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 4 Protein homooligomer Homooligomer；Protein × 6 PDB declaration: hexameric	Chain A 66–268（203 aa） Fragment：residues 66-268	Mutation：D146N/D149N	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；290 K；PEG 3350, Magnesium Chloride, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K	Resolution 3.40 Å R-free 0.261
1VB2 T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65-D146N-D149N Deposited 2004-02-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 5 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric	Chain A 66–268（203 aa） Fragment：residues 66-268	Mutation：D146N/D149N	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；290 K；PEG 3350, Magnesium Chloride, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K	Resolution 3.40 Å R-free 0.261
1VB2 T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)65-D146N-D149N Deposited 2004-02-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 6 Protein homooligomer Homooligomer；Protein × 60 PDB declaration: 60-meric	Chain A 66–268（203 aa） Fragment：residues 66-268	Mutation：D146N/D149N	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；290 K；PEG 3350, Magnesium Chloride, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K	Resolution 3.40 Å R-free 0.261
1VB4 T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36 Deposited 2004-02-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 60 PDB declaration: complete icosahedral assembly	Chain A 37–268（232 aa） Fragment：residues 37-268	Not recorded	CA CALCIUM ION × 60	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；290 K；PEG 3350, magnesium chloride, isopropanol , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K	Resolution 3.30 Å R-free 0.259
1VB4 T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36 Deposited 2004-02-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric	Chain A 37–268（232 aa） Fragment：residues 37-268	Not recorded	CA CALCIUM ION × 1	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；290 K；PEG 3350, magnesium chloride, isopropanol , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K	Resolution 3.30 Å R-free 0.259
1VB4 T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36 Deposited 2004-02-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 3 Protein homooligomer Homooligomer；Protein × 5 PDB declaration: pentameric	Chain A 37–268（232 aa） Fragment：residues 37-268	Not recorded	CA CALCIUM ION × 5	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；290 K；PEG 3350, magnesium chloride, isopropanol , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K	Resolution 3.30 Å R-free 0.259
1VB4 T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36 Deposited 2004-02-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 4 Protein homooligomer Homooligomer；Protein × 6 PDB declaration: hexameric	Chain A 37–268（232 aa） Fragment：residues 37-268	Not recorded	CA CALCIUM ION × 6	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；290 K；PEG 3350, magnesium chloride, isopropanol , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K	Resolution 3.30 Å R-free 0.259
1VB4 T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36 Deposited 2004-02-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 5 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric	Chain A 37–268（232 aa） Fragment：residues 37-268	Not recorded	CA CALCIUM ION × 1	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；290 K；PEG 3350, magnesium chloride, isopropanol , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K	Resolution 3.30 Å R-free 0.259
1VB4 T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36 Deposited 2004-02-21	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 6 Protein homooligomer Homooligomer；Protein × 60 PDB declaration: 60-meric	Chain A 37–268（232 aa） Fragment：residues 37-268	Not recorded	CA CALCIUM ION × 60	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；290 K；PEG 3350, magnesium chloride, isopropanol , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K	Resolution 3.30 Å R-free 0.259
1X33 T=3 recombinant capsid of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 180 PDB declaration: complete icosahedral assembly	Chain A 1–268（268 aa） Chain B 1–268（268 aa） Chain C 1–268（268 aa）	Not recorded	CA CALCIUM ION × 180	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；6% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 3.60 Å R-free 0.234
1X33 T=3 recombinant capsid of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 2 Protein homooligomer Homooligomer；Protein × 3 PDB declaration: trimeric	Chain A 1–268（268 aa） Chain B 1–268（268 aa） Chain C 1–268（268 aa）	Not recorded	CA CALCIUM ION × 3	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；6% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 3.60 Å R-free 0.234
1X33 T=3 recombinant capsid of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 3 Protein homooligomer Homooligomer；Protein × 15 PDB declaration: pentadecameric	Chain A 1–268（268 aa） Chain B 1–268（268 aa） Chain C 1–268（268 aa）	Not recorded	CA CALCIUM ION × 15	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；6% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 3.60 Å R-free 0.234
1X33 T=3 recombinant capsid of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 4 Protein homooligomer Homooligomer；Protein × 18 PDB declaration: octadecameric	Chain A 1–268（268 aa） Chain B 1–268（268 aa） Chain C 1–268（268 aa）	Not recorded	CA CALCIUM ION × 18	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；6% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 3.60 Å R-free 0.234
1X33 T=3 recombinant capsid of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 5 Protein homooligomer Homooligomer；Protein × 3 PDB declaration: trimeric	Chain A 1–268（268 aa） Chain B 1–268（268 aa） Chain C 1–268（268 aa）	Not recorded	CA CALCIUM ION × 3	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；6% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 3.60 Å R-free 0.234
1X33 T=3 recombinant capsid of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 6 Protein homooligomer Homooligomer；Protein × 60 PDB declaration: 60-meric	Chain A 1–268（268 aa） Chain B 1–268（268 aa） Chain C 1–268（268 aa）	Not recorded	CA CALCIUM ION × 60	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；6% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 3.60 Å R-free 0.234
1X35 Recombinant T=3 capsid of a site specific mutant of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 180 PDB declaration: complete icosahedral assembly	Chain A 1–268（268 aa） Chain B 1–268（268 aa） Chain C 1–268（268 aa）	Mutation：P53A Mutation：P53A Mutation：P53A	CA CALCIUM ION × 180	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；6% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 4.10 Å R-free 0.270
1X35 Recombinant T=3 capsid of a site specific mutant of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 2 Protein homooligomer Homooligomer；Protein × 3 PDB declaration: trimeric	Chain A 1–268（268 aa） Chain B 1–268（268 aa） Chain C 1–268（268 aa）	Mutation：P53A Mutation：P53A Mutation：P53A	CA CALCIUM ION × 3	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；6% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 4.10 Å R-free 0.270
1X35 Recombinant T=3 capsid of a site specific mutant of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 3 Protein homooligomer Homooligomer；Protein × 15 PDB declaration: pentadecameric	Chain A 1–268（268 aa） Chain B 1–268（268 aa） Chain C 1–268（268 aa）	Mutation：P53A Mutation：P53A Mutation：P53A	CA CALCIUM ION × 15	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；6% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 4.10 Å R-free 0.270
1X35 Recombinant T=3 capsid of a site specific mutant of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 4 Protein homooligomer Homooligomer；Protein × 18 PDB declaration: octadecameric	Chain A 1–268（268 aa） Chain B 1–268（268 aa） Chain C 1–268（268 aa）	Mutation：P53A Mutation：P53A Mutation：P53A	CA CALCIUM ION × 18	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；6% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 4.10 Å R-free 0.270
1X35 Recombinant T=3 capsid of a site specific mutant of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 5 Protein homooligomer Homooligomer；Protein × 3 PDB declaration: trimeric	Chain A 1–268（268 aa） Chain B 1–268（268 aa） Chain C 1–268（268 aa）	Mutation：P53A Mutation：P53A Mutation：P53A	CA CALCIUM ION × 3	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；6% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 4.10 Å R-free 0.270
1X35 Recombinant T=3 capsid of a site specific mutant of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 6 Protein homooligomer Homooligomer；Protein × 90 PDB declaration: 90-meric	Chain A 1–268（268 aa） Chain B 1–268（268 aa） Chain C 1–268（268 aa）	Mutation：P53A Mutation：P53A Mutation：P53A	CA CALCIUM ION × 90	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；6% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 4.10 Å R-free 0.270
1X36 T=1 capsid of an amino-terminal deletion mutant of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 60 PDB declaration: complete icosahedral assembly	Chain A 32–268（237 aa） Fragment：residues 32-268	Not recorded	CA CALCIUM ION × 60	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；4% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 2.70 Å R-free 0.247
1X36 T=1 capsid of an amino-terminal deletion mutant of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric	Chain A 32–268（237 aa） Fragment：residues 32-268	Not recorded	CA CALCIUM ION × 1	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；4% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 2.70 Å R-free 0.247
1X36 T=1 capsid of an amino-terminal deletion mutant of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 3 Protein homooligomer Homooligomer；Protein × 5 PDB declaration: pentameric	Chain A 32–268（237 aa） Fragment：residues 32-268	Not recorded	CA CALCIUM ION × 5	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；4% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 2.70 Å R-free 0.247
1X36 T=1 capsid of an amino-terminal deletion mutant of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 4 Protein homooligomer Homooligomer；Protein × 6 PDB declaration: hexameric	Chain A 32–268（237 aa） Fragment：residues 32-268	Not recorded	CA CALCIUM ION × 6	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；4% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 2.70 Å R-free 0.247
1X36 T=1 capsid of an amino-terminal deletion mutant of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 5 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric	Chain A 32–268（237 aa） Fragment：residues 32-268	Not recorded	CA CALCIUM ION × 1	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；4% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 2.70 Å R-free 0.247
1X36 T=1 capsid of an amino-terminal deletion mutant of SeMV CP Deposited 2005-04-29	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 6 Protein homooligomer Homooligomer；Protein × 60 PDB declaration: 60-meric	Chain A 32–268（237 aa） Fragment：residues 32-268	Not recorded	CA CALCIUM ION × 60	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 7.5；4% PEG 3350, 0.1M MgCl2, Isopropanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP	Resolution 2.70 Å R-free 0.247
2VQ0 Capsid structure of Sesbania mosaic virus coat protein deletion mutant rCP(delta 48 to 59) Deposited 2008-03-10	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 180 PDB declaration: 180-MERIC	Chain A 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain A 60–268（209 aa） Fragment：RESIDUES 1-47,60-268 Chain B 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain B 60–268（209 aa） Fragment：RESIDUES 1-47,60-268 Chain C 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain C 60–268（209 aa） Fragment：RESIDUES 1-47,60-268	Not recorded	CA CALCIUM ION × 180	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 7.5；0.2 M LI2SO4 MONOHYDRATE, 0.1 M BISTRIS (PH7.5), 25 % PEG 3350 VAPOUR DIFFUSION, SITTING DROP	Resolution 3.60 Å R-free 0.258
2VQ0 Capsid structure of Sesbania mosaic virus coat protein deletion mutant rCP(delta 48 to 59) Deposited 2008-03-10	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 2 Protein homooligomer Homooligomer；Protein × 3 PDB declaration: trimeric	Chain A 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain A 60–268（209 aa） Fragment：RESIDUES 1-47,60-268 Chain B 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain B 60–268（209 aa） Fragment：RESIDUES 1-47,60-268 Chain C 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain C 60–268（209 aa） Fragment：RESIDUES 1-47,60-268	Not recorded	CA CALCIUM ION × 3	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 7.5；0.2 M LI2SO4 MONOHYDRATE, 0.1 M BISTRIS (PH7.5), 25 % PEG 3350 VAPOUR DIFFUSION, SITTING DROP	Resolution 3.60 Å R-free 0.258
2VQ0 Capsid structure of Sesbania mosaic virus coat protein deletion mutant rCP(delta 48 to 59) Deposited 2008-03-10	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 3 Protein homooligomer Homooligomer；Protein × 15 PDB declaration: pentadecameric	Chain A 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain A 60–268（209 aa） Fragment：RESIDUES 1-47,60-268 Chain B 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain B 60–268（209 aa） Fragment：RESIDUES 1-47,60-268 Chain C 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain C 60–268（209 aa） Fragment：RESIDUES 1-47,60-268	Not recorded	CA CALCIUM ION × 15	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 7.5；0.2 M LI2SO4 MONOHYDRATE, 0.1 M BISTRIS (PH7.5), 25 % PEG 3350 VAPOUR DIFFUSION, SITTING DROP	Resolution 3.60 Å R-free 0.258
2VQ0 Capsid structure of Sesbania mosaic virus coat protein deletion mutant rCP(delta 48 to 59) Deposited 2008-03-10	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 4 Protein homooligomer Homooligomer；Protein × 18 PDB declaration: octadecameric	Chain A 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain A 60–268（209 aa） Fragment：RESIDUES 1-47,60-268 Chain B 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain B 60–268（209 aa） Fragment：RESIDUES 1-47,60-268 Chain C 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain C 60–268（209 aa） Fragment：RESIDUES 1-47,60-268	Not recorded	CA CALCIUM ION × 18	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 7.5；0.2 M LI2SO4 MONOHYDRATE, 0.1 M BISTRIS (PH7.5), 25 % PEG 3350 VAPOUR DIFFUSION, SITTING DROP	Resolution 3.60 Å R-free 0.258
2VQ0 Capsid structure of Sesbania mosaic virus coat protein deletion mutant rCP(delta 48 to 59) Deposited 2008-03-10	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 5 Protein homooligomer Homooligomer；Protein × 3 PDB declaration: trimeric	Chain A 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain A 60–268（209 aa） Fragment：RESIDUES 1-47,60-268 Chain B 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain B 60–268（209 aa） Fragment：RESIDUES 1-47,60-268 Chain C 1–47（47 aa） Fragment：RESIDUES 1-47,60-268 Chain C 60–268（209 aa） Fragment：RESIDUES 1-47,60-268	Not recorded	CA CALCIUM ION × 3	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；pH 7.5；0.2 M LI2SO4 MONOHYDRATE, 0.1 M BISTRIS (PH7.5), 25 % PEG 3350 VAPOUR DIFFUSION, SITTING DROP	Resolution 3.60 Å R-free 0.258
2WLP Sesbania mosaic virus capsid protein dimer mutant (rCP-DEL-N65-W170K) Deposited 2009-06-24	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric	Chain A 66–268（203 aa） Fragment：RESIDUES 66-268	Mutation：YES	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions MICROBATCH；pH 6.5；0.1 M BIS TRIS (PH 6.5) AND 28% PEG 2000	Resolution 2.65 Å R-free 0.294
2WLP Sesbania mosaic virus capsid protein dimer mutant (rCP-DEL-N65-W170K) Deposited 2009-06-24	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric	Chain B 66–268（203 aa） Fragment：RESIDUES 66-268	Mutation：YES	No recorded non-water small molecule	X-RAY DIFFRACTION X-ray crystallization conditions MICROBATCH；pH 6.5；0.1 M BIS TRIS (PH 6.5) AND 28% PEG 2000	Resolution 2.65 Å R-free 0.294
4Y4Y T=1 capsid structure of SeMV Ndel65CP fused with B-domain of S. aureus protein SpA at the N-terminus (C2 crystal form) Deposited 2015-02-11	Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics	Assembly 1 Insufficient information Homooligomer；Protein × 60 PDB declaration: 60-meric	Chain A 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain B 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain C 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain D 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain E 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain F 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain G 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain H 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain I 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain J 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain K 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain L 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain M 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain N 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain O 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain P 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain Q 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain R 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain S 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain T 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain U 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain V 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain W 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain X 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain Y 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain Z 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain a 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain b 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain c 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268 Chain d 66–268（203 aa） Fragment：UNP RESIDUES 158-211, RESIDUES 66-268	Not recorded	SO4 SULFATE ION × 12	X-RAY DIFFRACTION X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；295 K；15-20% PEG 4000, 5% Iso-propanol, 100 mM Sodium citrate	Resolution 3.00 Å R-free 0.200

10 other PDB entries and 50 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence

UniProt name	Q9EB06_9VIRU
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain 0； PDBConstruct 80–282； UniProt 66–268 Author chain 1； PDBConstruct 80–282； UniProt 66–268 Author chain 2； PDBConstruct 80–282； UniProt 66–268 Author chain 3； PDBConstruct 80–282； UniProt 66–268 Author chain 4； PDBConstruct 80–282； UniProt 66–268 Author chain 5； PDBConstruct 80–282； UniProt 66–268 Author chain 6； PDBConstruct 80–282； UniProt 66–268 Author chain 7； PDBConstruct 80–282； UniProt 66–268 Author chain A； PDBConstruct 80–282； UniProt 66–268 Author chain B； PDBConstruct 80–282； UniProt 66–268 Author chain C； PDBConstruct 80–282； UniProt 66–268 Author chain D； PDBConstruct 80–282； UniProt 66–268 Author chain E； PDBConstruct 80–282； UniProt 66–268 Author chain F； PDBConstruct 80–282； UniProt 66–268 Author chain G； PDBConstruct 80–282； UniProt 66–268 Author chain H； PDBConstruct 80–282； UniProt 66–268 Author chain I； PDBConstruct 80–282； UniProt 66–268 Author chain J； PDBConstruct 80–282； UniProt 66–268 Author chain K； PDBConstruct 80–282； UniProt 66–268 Author chain L； PDBConstruct 80–282； UniProt 66–268 Author chain M； PDBConstruct 80–282； UniProt 66–268 Author chain N； PDBConstruct 80–282； UniProt 66–268 Author chain O； PDBConstruct 80–282； UniProt 66–268 Author chain P； PDBConstruct 80–282； UniProt 66–268 Author chain Q； PDBConstruct 80–282； UniProt 66–268 Author chain R； PDBConstruct 80–282； UniProt 66–268 Author chain S； PDBConstruct 80–282； UniProt 66–268 Author chain T； PDBConstruct 80–282； UniProt 66–268 Author chain U； PDBConstruct 80–282； UniProt 66–268 Author chain V； PDBConstruct 80–282； UniProt 66–268 Author chain W； PDBConstruct 80–282； UniProt 66–268 Author chain X； PDBConstruct 80–282； UniProt 66–268 Author chain Y； PDBConstruct 80–282； UniProt 66–268 Author chain Z； PDBConstruct 80–282； UniProt 66–268 Author chain a； PDBConstruct 80–282； UniProt 66–268 Author chain b； PDBConstruct 80–282； UniProt 66–268 Author chain c； PDBConstruct 80–282； UniProt 66–268 Author chain d； PDBConstruct 80–282； UniProt 66–268 Author chain e； PDBConstruct 80–282； UniProt 66–268 Author chain f； PDBConstruct 80–282； UniProt 66–268 Author chain g； PDBConstruct 80–282； UniProt 66–268 Author chain h； PDBConstruct 80–282； UniProt 66–268 Author chain i； PDBConstruct 80–282； UniProt 66–268 Author chain j； PDBConstruct 80–282； UniProt 66–268 Author chain k； PDBConstruct 80–282； UniProt 66–268 Author chain l； PDBConstruct 80–282； UniProt 66–268 Author chain m； PDBConstruct 80–282； UniProt 66–268 Author chain n； PDBConstruct 80–282； UniProt 66–268 Author chain o； PDBConstruct 80–282； UniProt 66–268 Author chain p； PDBConstruct 80–282； UniProt 66–268 Author chain q； PDBConstruct 80–282； UniProt 66–268 Author chain r； PDBConstruct 80–282； UniProt 66–268 Author chain s； PDBConstruct 80–282； UniProt 66–268 Author chain t； PDBConstruct 80–282； UniProt 66–268 Author chain u； PDBConstruct 80–282； UniProt 66–268 Author chain v； PDBConstruct 80–282； UniProt 66–268 Author chain w； PDBConstruct 80–282； UniProt 66–268 Author chain x； PDBConstruct 80–282； UniProt 66–268 Author chain y； PDBConstruct 80–282； UniProt 66–268 Author chain z； PDBConstruct 80–282； UniProt 66–268

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

P(r) Distance Distribution P(r) Distribution

Download Download SAXS (.dat) P(r) (.pr.out) CIF

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	4y5z
Deposition date deposition_date	2015-02-12
Structure title title	T=1 capsid structure of SeMV Ndel65CP fused with B-domain of S. aureus protein SpA at the N-terminus (P1 crystal form)
Keywords keywords	coat protein, chimeric VLP, in vitro assembly, VIRUS; VIRUS
Experimental Method method	X-RAY DIFFRACTION

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3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier	76.98 Å
Radius of gyration Rg (electron density) rg_electron	75.96 Å
Forward intensity I(0) i0	19851900000.00
Molecular weight molecular_weight	1216500.0 kDa
Excluded volume excluded_volume	1527700 Å³
Envelope volume envelope_volume	2672600 Å³
Hydration-shell volume shell_volume	288300 Å³
Envelope diameter envelope_diameter	197.9 Å
Shell Rg shell_rg	88.45 Å
Envelope Rg envelope_rg	67.24 Å
Shape Rg shape_rg	75.96 Å
Total Rg total_rg	76.14 Å
Total atoms total_atoms	85471
Residues n_residues	11534
Spherical-harmonic order n_harmonics	20
q range q_range	— – 0.5000 Å⁻¹
Data points n_points	101
Shell type shell_type	directional
Solvent electron density solvent_density	0.3340 e/Å³
Shell contrast contrast_shell	0.0300 e/Å³
CRYSOL version crysol_version	4.1.3

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4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax	188.3 Å
Rg (real space) rg_real	76.27 Å
Rg uncertainty (real space) rg_real_error	0.52 Å
I(0) (real space) i0_real	1.9850e+10
I(0) uncertainty (real space) i0_real_error	3.5010e+08
Rg (reciprocal space) rg_reciprocal	79.40 Å
I(0) (reciprocal space) i0_reciprocal	19980000000.0000
Solution quality estimate total_estimate	0.7936
Solution quality rating solution_quality	GOOD a GOOD solution
P(r) peaks n_peaks	1
Primary peak position r_peak_primary	131.8 Å
Skewness Skewness skewness	-0.419
Kurtosis Kurtosis kurtosis	-0.629
Angular range angular_range	— – 0.1000 Å⁻¹
Current regularization parameter α current_alpha	0.0001
Highest regularization parameter α highest_alpha	7115000000.0000
Real-space data points n_real_points	21
GNOM version gnom_version	4.1.3
Quality Criteria quality_criteria	AN1: 0.000; Oscil: 0.810; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.882; Smooth: 0.000

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5. Crystallography and Experiment 5. Crystallography & Experiment

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6. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Description description	Immunoglobulin G-binding protein A,Coat protein
Molecular weight formula_weight	30543.2 kDa
Source method src_method	man
Copy count entity_count	60

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,c,e,g,i,k,m,o,q,r,s,t,u,v,w,x,y,z,0,1,2,3,4,5,6,7,b,d,f,h,j,l,n,p
Atom count atom_count	86922

MRGSHHHHHHGMASMDNKFNKEQQNAFYEILNMPNLNEEQRNGFIQSLKDDPSQSANLLSEAKKLNESQAPKEGSELEMAVSSSRGGITVLTHSELSAEIGVTDSIVVSSELVMPYTVGTWLRGVAANWSKYSWLSVRYTYIPSCPSSTAGSIHMGFQYDMADTVPVSVNQLSNLRGYVSGQVWSGSAGLCFINGTRCSDTSTAISTTLDVSKLGKKWYPYKTSADYATAVGVDVNIATPLVPARLVIALLDGSSSTAVAAGRIYCTYTIQMIEPTASALNN

来源 Source

来源生物 organism	Sesbania mosaic virus
NCBI Class编号 ncbi_taxonomy_id	12558
宿主生物 host_organism	Escherichia coli

Entity 2 Entity 2 non-polymer

Description description	SULFATE ION
Molecular weight formula_weight	96.1 kDa
Source method src_method	syn
Copy count entity_count	12

Entity 3 Entity 3 water

Description description	water
Molecular weight formula_weight	18.0 kDa
Source method src_method	nat
Copy count entity_count	1451

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7. Fold Classification (SCOP + CATH) 94 domains

SCOP 2.08 (34 domains)

Domain ID domain_id	d4y5z0_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5z1_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5z2_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5z3_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5z4_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5z5_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5z6_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5z7_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5za_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zb_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zc_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zd_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5ze_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zf_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zg_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zh_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zi_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zj_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zk_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zl_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zm_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zn_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zo_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zp_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zq_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zr_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zs_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zt_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zu_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zv_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zw_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zx_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zy_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

Domain ID domain_id	d4y5zz_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.7 — Tombusviridae-like VP

CATH v4.4 (60 domains)

Domain ID domain_id	4y5z000
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5z100
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5z200
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5z300
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5z400
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5z500
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5z600
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5z700
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zA00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zB00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zC00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zD00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zE00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zF00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zG00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zH00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zI00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zJ00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zK00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zL00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zM00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zN00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zO00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zP00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zQ00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zR00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zS00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zT00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zU00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zV00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zW00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zX00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zY00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zZ00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5za00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zb00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zc00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zd00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5ze00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zf00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zg00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zh00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zi00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zj00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zk00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zl00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zm00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zn00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zo00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zp00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zq00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zr00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zs00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zt00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zu00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zv00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zw00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zx00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zy00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	4y5zz00
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

▶

8. Citations (1)

▶

Unit-cell length a length_a	186.480 Å
Unit-cell length b length_b	187.420 Å
Unit-cell length c length_c	187.930 Å
Unit-cell angle α angle_alpha	61.09 °
Unit-cell angle β angle_beta	89.24 °
Unit-cell angle γ angle_gamma	60.20 °
Molecules per unit cell Z z_pdb	60

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	2.950 Å
Low-resolution limit resolution_low	41.916 Å
R factor r_factor	0.1987
R_work r_work	0.1960
R_free r_free	0.2494

T=1 capsid structure of SeMV Ndel65CP fused with B-domain of S. aureus protein SpA at the N-terminus (P1 crystal form)

1. Protein Identity and Related Structures Protein Identity & Related Structures

Immunoglobulin G-binding protein A,Coat protein

State in the Current Structure

Other States of the Same Protein in the Database

Immunoglobulin G-binding protein A,Coat protein

State in the Current Structure

Other States of the Same Protein in the Database

SAXS scattering curve SAXS Profile

P(r) Distance Distribution P(r) Distribution

2. Structure Basics 2. Structure Basics

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

5. Crystallography and Experiment 5. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

6. Entities and Polymers Entities & Polymers (3)

Entity 1 Entity 1 polymer

Polymer Polymer

来源 Source

Entity 2 Entity 2 non-polymer

Entity 3 Entity 3 water

7. Fold Classification (SCOP + CATH) 94 domains

SCOP 2.08 (34 domains)

CATH v4.4 (60 domains)

8. Citations (1)

9. Files and Curves (10)

Files (7)

Curves (3)

fit	/app/data/saxs_computation/y5/4y5z/4y5z.fit
pddf	/app/data/pr_computation/y5/4y5z/4y5z.pr.out
profile	/app/data/saxs_computation/y5/4y5z/4y5z.dat