5i1s

Villin headpiece subdomain with a Lys30 to APC substitution

Method: X-RAY DIFFRACTION Dmax: 68.9 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Villin-1

OrganismNot specified

UniProt P02640

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 792–826 Chain B; UniProt 792–826 Non-standard monomer:Yes (specific site not provided by mmCIF) D-Villin headpiece subdomain × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 4.6;298 K;0.1 M sodium acetate pH 4.6, 1.5 M ammonium sulfate, 30% (v/v) PEG2000MME Resolution 1.12 Å R-free 0.185

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

45 other PDB entries and 51 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name VILI_CHICK
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–35; UniProt 792–826 Author chain B; PDBConstruct 1–35; UniProt 792–826

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 5i1s

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 5i1s
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2. Structure Basics 2. Structure Basics

Entry ID entry_id5i1s
Deposition date deposition_date2016-02-05
Structure title titleVillin headpiece subdomain with a Lys30 to APC substitution
Keywords keywordsquasiracemic, foldamer, alpha/beta peptide, DE NOVO PROTEIN; DE NOVO PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier19.05
Radius of gyration Rg (electron density) rg_electron18.34
Forward intensity I(0) i04417840.00
Molecular weight molecular_weight16368.0 kDa
Excluded volume excluded_volume21123 ų
Envelope volume envelope_volume25106 ų
Hydration-shell volume shell_volume12604 ų
Envelope diameter envelope_diameter68.9
Shell Rg shell_rg22.42
Envelope Rg envelope_rg18.45
Shape Rg shape_rg18.33
Total Rg total_rg19.16
Total atoms total_atoms2315
Residues n_residues72
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax68.9
Rg (real space) rg_real19.17
Rg uncertainty (real space) rg_real_error0.48
I(0) (real space) i0_real4.4180e+06
I(0) uncertainty (real space) i0_real_error5.4590e+04
Rg (reciprocal space) rg_reciprocal19.15
I(0) (reciprocal space) i0_reciprocal4418000.0000
Solution quality estimate total_estimate0.8215
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary20.1
Skewness Skewness skewness0.514
Kurtosis Kurtosis kurtosis0.088
Angular range angular_range— – 0.4150 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha394600.0000
Real-space data points n_real_points73
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.643; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.842; Smooth: 0.905

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)