5ik1

Open state of P450cam after soaking in camphor

Method: X-RAY DIFFRACTION Dmax: 70.0 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Camphor 5-monooxygenase

Pseudomonas putida

UniProt P00183

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 10–415 Not recorded HEM PROTOPORPHYRIN IX CONTAINING FE × 1 CAM CAMPHOR × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 6.5;298 K;100 mM Bis-Tris 10-22 % PEG 8000 200 mM KCl Resolution 1.53 Å R-free 0.205

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

128 other PDB entries and 172 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CPXA_PSEPU
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–406; UniProt 10–415

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 5ik1

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 5ik1
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2. Structure Basics 2. Structure Basics

Entry ID entry_id5ik1
Deposition date deposition_date2016-03-03
Structure title titleOpen state of P450cam after soaking in camphor
Keywords keywordsconformational state, structural change, crystal contact, OXIDOREDUCTASE; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier22.66
Radius of gyration Rg (electron density) rg_electron21.45
Forward intensity I(0) i033843500.00
Molecular weight molecular_weight44960.0 kDa
Excluded volume excluded_volume56332 ų
Envelope volume envelope_volume65183 ų
Hydration-shell volume shell_volume24974 ų
Envelope diameter envelope_diameter71.0
Shell Rg shell_rg28.54
Envelope Rg envelope_rg21.67
Shape Rg shape_rg21.46
Total Rg total_rg22.28
Total atoms total_atoms3165
Residues n_residues394
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax70.0
Rg (real space) rg_real22.54
Rg uncertainty (real space) rg_real_error0.39
I(0) (real space) i0_real3.3840e+07
I(0) uncertainty (real space) i0_real_error4.4550e+05
Rg (reciprocal space) rg_reciprocal22.57
I(0) (reciprocal space) i0_reciprocal33840000.0000
Solution quality estimate total_estimate0.9032
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary27.6
Skewness Skewness skewness0.153
Kurtosis Kurtosis kurtosis-0.500
Angular range angular_range— – 0.3500 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha5034000.0000
Real-space data points n_real_points67
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.934; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.990; Smooth: 0.947

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd5ik1a_
Class classa — All alpha proteins
Fold Fold folda.104 — Cytochrome P450
Superfamily Superfamily superfamilya.104.1 — Cytochrome P450
Family Family familya.104.1.1 — Cytochrome P450

CATH v4.4 (1 domains)

Domain ID domain_id5ik1A00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology630 — Cytochrome p450
Homologous superfamily homologous superfamily10 — Cytochrome P450

8. Citations (1)

9. Files and Curves (10)