SAXSdb — 5mq7

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1. Protein Identity and Related Structures Protein Identity & Related Structures

6,7-dimethyl-8-ribityllumazine synthase

Aquifex aeolicus

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 360	No other associated polymer	Review required

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	RISB_AQUAE
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain 0A； PDBConstruct 1–154； UniProt 1–154 Author chain 0B； PDBConstruct 1–154； UniProt 1–154 Author chain 0C； PDBConstruct 1–154； UniProt 1–154 Author chain 0D； PDBConstruct 1–154； UniProt 1–154 Author chain 0E； PDBConstruct 1–154； UniProt 1–154 Author chain 0X； PDBConstruct 1–154； UniProt 1–154 Author chain 1A； PDBConstruct 1–154； UniProt 1–154 Author chain 1B； PDBConstruct 1–154； UniProt 1–154 Author chain 1C； PDBConstruct 1–154； UniProt 1–154 Author chain 1D； PDBConstruct 1–154； UniProt 1–154 Author chain 1E； PDBConstruct 1–154； UniProt 1–154 Author chain 1X； PDBConstruct 1–154； UniProt 1–154 Author chain 2A； PDBConstruct 1–154； UniProt 1–154 Author chain 2B； PDBConstruct 1–154； UniProt 1–154 Author chain 2C； PDBConstruct 1–154； UniProt 1–154 Author chain 2D； PDBConstruct 1–154； UniProt 1–154 Author chain 2E； PDBConstruct 1–154； UniProt 1–154 Author chain 2X； PDBConstruct 1–154； UniProt 1–154 Author chain 3A； PDBConstruct 1–154； UniProt 1–154 Author chain 3B； PDBConstruct 1–154； UniProt 1–154 Author chain 3C； PDBConstruct 1–154； UniProt 1–154 Author chain 3D； PDBConstruct 1–154； UniProt 1–154 Author chain 3E； PDBConstruct 1–154； UniProt 1–154 Author chain 3X； PDBConstruct 1–154； UniProt 1–154 Author chain 4A； PDBConstruct 1–154； UniProt 1–154 Author chain 4B； PDBConstruct 1–154； UniProt 1–154 Author chain 4C； PDBConstruct 1–154； UniProt 1–154 Author chain 4D； PDBConstruct 1–154； UniProt 1–154 Author chain 4E； PDBConstruct 1–154； UniProt 1–154 Author chain 4X； PDBConstruct 1–154； UniProt 1–154 Author chain 5A； PDBConstruct 1–154； UniProt 1–154 Author chain 5B； PDBConstruct 1–154； UniProt 1–154 Author chain 5C； PDBConstruct 1–154； UniProt 1–154 Author chain 5D； PDBConstruct 1–154； UniProt 1–154 Author chain 5E； PDBConstruct 1–154； UniProt 1–154 Author chain 5X； PDBConstruct 1–154； UniProt 1–154 Author chain 6A； PDBConstruct 1–154； UniProt 1–154 Author chain 6B； PDBConstruct 1–154； UniProt 1–154 Author chain 6C； PDBConstruct 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The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	5mq7
Deposition date deposition_date	2016-12-20
Structure title title	Structure of AaLS-13
Keywords keywords	cryo-EM, porous protein cage, icosahedral symmetry, engineered lumazine synthase, TRANSFERASE; TRANSFERASE
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5mq7__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5mq7__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

5mq7__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	0.00 Å
Rg (electron density)	176.90 Å
Total Rg	176.90 Å
Atom count	286920
Residues	57960
Excluded volume	4657300 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`5mq7__assembly_1__model_1`	360-meric （1）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Description description	6,7-dimethyl-8-ribityllumazine synthase
Molecular weight formula_weight	17569.9 kDa
EC 编号 ec_number	2.5.1.78
Source method src_method	man
Copy count entity_count	360

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	;0A,0B,0C,0D,0E,0X,1A,1B,1C,1D,1E,1X,2A,2B,2C,2D,2E,2X,3A,3B,3C,3D,3E,3X,4A,4B,4C,4D,4E,4X,5A,5B,5C,5D,5E,5X,6A,6B,6C,6D,6E,6X,7A,7B,7C,7D,7E,7X,8A,8B,8C,8D,8E,8X,9A,9B,9C,9D,9E,9X,AA,AB,AC,AD,AE,AX,BA,BB,BC,BD,BE,BX,CA,CB,CC,CD,CE,CX,DA,DB,DC,DD,DE,DX,EA,EB,EC,ED,EE,EX,FA,FB,FC,FD,FE,FX,GA,GB,GC,GD,GE,GX,HA,HB,HC,HD,HE,HX,IA,IB,IC,ID,IE,IX,JA,JB,JC,JD,JE,JX,KA,KB,KC,KD,KE,KX,LA,LB,LC,LD,LE,LX,MA,MB,MC,MD,ME,MX,NA,NB,NC,ND,NE,NX,OA,OB,OC,OD,OE,OX,PA,PB,PC,PD,PE,PX,QA,QB,QC,QD,QE,QX,RA,RB,RC,RD,RE,RX,SA,SB,SC,SD,SE,SX,TA,TB,TC,TD,TE,TX,UA,UB,UC,UD,UE,UX,VA,VB,VC,VD,VE,VX,WA,WB,WC,WD,WE,WX,XA,XB,XC,XD,XE,XX,YA,YB,YC,YD,YE,YX,ZA,ZB,ZC,ZD,ZE,ZX,aA,aB,aC,aD,aE,aX,bA,bB,bC,bD,bE,bX,cA,cB,cC,cD,cE,cX,dA,dB,dC,dD,dE,dX,eA,eB,eC,eD,eE,eX,fA,fB,fC,fD,fE,fX,gA,gB,gC,gD,gE,gX,hA,hB,hC,hD,hE,hX,iA,iB,iC,iD,iE,iX,jA,jB,jC,jD,jE,jX,kA,kB,kC,kD,kE,kX,lA,lB,lC,lD,lE,lX,mA,mB,mC,mD,mE,mX,nA,nB,nC,nD,nE,nX,oA,oB,oC,oD,oE,oX,pA,pB,pC,pD,pE,pX,qA,qB,qC,qD,qE,qX,rA,rB,rC,rD,rE,rX,sA,sB,sC,sD,sE,sX,tA,tB,tC,tD,tE,tX,uA,uB,uC,uD,uE,uX,vA,vB,vC,vD,vE,vX,wA,wB,wC,wD,wE,wX,xA,xB,xC,xD,xE,xX ;
Atom count atom_count	286920

MEIYEGKLTAEGLRFGIVASRFNHALVGRLVEGAIDCIVRHGGREEDITLVCVPGSWEIPVAAGELARKEDIDAVIAIGVLIEGAEPHFDYIASEVSKGLANLSLELRKPISFGDITDDELEEAIECAGTEHGNKGWEAALSAIEMANLFKSLRLEHHHHH

Source Source

Source organism organism	Aquifex aeolicus
NCBI taxonomy ID ncbi_taxonomy_id	63363
Host organism host_organism	Escherichia coli

▶

Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	5.20 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	9900

Structure of AaLS-13

1. Protein Identity and Related Structures Protein Identity & Related Structures

6,7-dimethyl-8-ribityllumazine synthase

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

5mq7__assembly_1__model_1

5mq7__assembly_1__model_1 | I(q)

5mq7__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)

Structure of AaLS-13

1. Protein Identity and Related Structures Protein Identity & Related Structures

6,7-dimethyl-8-ribityllumazine synthase

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

5mq7__assembly_1__model_1

5mq7__assembly_1__model_1 | I(q)

5mq7__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)