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5r69

XChem group deposition -- Crystal Structure of human YEATS4 in complex with XS038644e

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

YEATS domain-containing protein 4

Homo sapiens

UniProt O95619

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 1,2-ETHANEDIOL × 1 ~{N}-(5-oxidanylidene-7,8-dihydro-6~{H}-naphthalen-2-yl)ethanamide × 1 water × 1 Consistent with protein count
2 Protein monomer Monomer Protein 1 1,2-ETHANEDIOL × 2 ~{N}-(5-oxidanylidene-7,8-dihydro-6~{H}-naphthalen-2-yl)ethanamide × 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
5r68 5r68 5r69 5r69 5vna 5vna 5vna 5vna 5vnb 5vnb 5vnb 5y8v

28 assemblies; showing the first 12

Homodimer

None

Homotetramer
7jfy

1 assemblies

Other homooligomers

None

Heteromeric or nucleic-acid complex
5vnb 5xtz 5xtz 8i60 8i60 8iiy 8iiz 8ij0 8ij0 8x15 8x19 8x1c

14 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name YETS4_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 2–174； UniProt 18–190 Author chain B； PDBConstruct 2–174； UniProt 18–190

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5r69
Deposition date deposition_date2020-02-29
Structure title titleXChem group deposition -- Crystal Structure of human YEATS4 in complex with XS038644e
Keywords keywordsSGC - Diamond I04-1 fragment screening, PanDDA, XChemExplorer, HISTONE READER, YEATS DOMAIN, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5r69__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5r69__assembly_1__model_1 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5r69__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）17.65 Å
Rg (electron density)16.46 Å
Total Rg17.51 Å
Atom count1095
Residues130
Excluded volume19774 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5r69__assembly_1__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 5r69__assembly_2__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd5r69a_
Class classb — All beta proteins
Fold Fold foldb.7 — C2 domain-like
Superfamily Superfamily superfamilyb.7.1 — C2 domain (Calcium/lipid-binding domain, CaLB)
Family Family familyb.7.1.0 — automated matches
Domain ID domain_idd5r69b_
Class classb — All beta proteins
Fold Fold foldb.7 — C2 domain-like
Superfamily Superfamily superfamilyb.7.1 — C2 domain (Calcium/lipid-binding domain, CaLB)
Family Family familyb.7.1.0 — automated matches
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7. Citations (1)