6ef3

Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Proteasome subunit beta type-1

Saccharomyces cerevisiae S288c

UniProt P38624

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB1_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 1; PDBConstruct 1–215; UniProt 1–215

Proteasome subunit beta type-2

Saccharomyces cerevisiae S288c

UniProt P25043

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB2_YEAST
Isoform —
PDB entities 2
Chains and sequence ranges Author chain 2; PDBConstruct 1–261; UniProt 1–261

Proteasome subunit beta type-3

Saccharomyces cerevisiae S288c

UniProt P25451

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB3_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain 3; PDBConstruct 1–205; UniProt 1–205

Proteasome subunit beta type-4

Saccharomyces cerevisiae S288c

UniProt P22141

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB4_YEAST
Isoform —
PDB entities 4
Chains and sequence ranges Author chain 4; PDBConstruct 1–198; UniProt 1–198

Proteasome subunit beta type-5

Saccharomyces cerevisiae S288c

UniProt P30656

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB5_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain 5; PDBConstruct 1–287; UniProt 1–287

Proteasome subunit beta type-6

Saccharomyces cerevisiae S288c

UniProt P23724

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB6_YEAST
Isoform —
PDB entities 6
Chains and sequence ranges Author chain 6; PDBConstruct 1–241; UniProt 1–241

Proteasome subunit beta type-7

Saccharomyces cerevisiae S288c

UniProt P30657

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSB7_YEAST
Isoform —
PDB entities 7
Chains and sequence ranges Author chain 7; PDBConstruct 1–266; UniProt 1–266

Proteasome subunit alpha type-1

Saccharomyces cerevisiae S288c

UniProt P21243

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA1_YEAST
Isoform —
PDB entities 8
Chains and sequence ranges Author chain A; PDBConstruct 1–252; UniProt 1–252

Proteasome subunit alpha type-2

Saccharomyces cerevisiae S288c

UniProt P23639

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA2_YEAST
Isoform —
PDB entities 9
Chains and sequence ranges Author chain B; PDBConstruct 1–250; UniProt 1–250

Proteasome subunit alpha type-3

Saccharomyces cerevisiae S288c

UniProt P23638

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA3_YEAST
Isoform —
PDB entities 10
Chains and sequence ranges Author chain C; PDBConstruct 1–258; UniProt 1–258

Proteasome subunit alpha type-4

Saccharomyces cerevisiae S288c

UniProt P40303

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA4_YEAST
Isoform —
PDB entities 11
Chains and sequence ranges Author chain D; PDBConstruct 1–254; UniProt 1–254

Proteasome subunit alpha type-5

Saccharomyces cerevisiae S288c

UniProt P32379

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA5_YEAST
Isoform —
PDB entities 12
Chains and sequence ranges Author chain E; PDBConstruct 1–260; UniProt 1–260

Proteasome subunit alpha type-6

Saccharomyces cerevisiae S288c

UniProt P40302

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA6_YEAST
Isoform —
PDB entities 13
Chains and sequence ranges Author chain F; PDBConstruct 1–234; UniProt 1–234

Probable proteasome subunit alpha type-7

Saccharomyces cerevisiae S288c

UniProt P21242

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSA7_YEAST
Isoform —
PDB entities 14
Chains and sequence ranges Author chain G; PDBConstruct 1–288; UniProt 1–288

26S proteasome regulatory subunit 7 homolog

Saccharomyces cerevisiae S288c

UniProt P33299

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRS7_YEAST
Isoform —
PDB entities 15
Chains and sequence ranges Author chain H; PDBConstruct 1–467; UniProt 1–467

26S proteasome regulatory subunit 4 homolog

Saccharomyces cerevisiae S288c

UniProt P40327

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRS4_YEAST
Isoform —
PDB entities 16
Chains and sequence ranges Author chain I; PDBConstruct 1–437; UniProt 1–437

26S proteasome regulatory subunit 8 homolog

Saccharomyces cerevisiae S288c

UniProt Q01939

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRS8_YEAST
Isoform —
PDB entities 17
Chains and sequence ranges Author chain J; PDBConstruct 1–405; UniProt 1–405

26S proteasome regulatory subunit 6B homolog

Saccharomyces cerevisiae S288c

UniProt P33298

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRS6B_YEAST
Isoform —
PDB entities 18
Chains and sequence ranges Author chain K; PDBConstruct 1–428; UniProt 1–428

26S proteasome subunit RPT4

Saccharomyces cerevisiae S288c

UniProt P53549

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRS10_YEAST
Isoform —
PDB entities 19
Chains and sequence ranges Author chain L; PDBConstruct 1–437; UniProt 1–437

26S proteasome regulatory subunit 6A

Saccharomyces cerevisiae S288c

UniProt P33297

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PRS6A_YEAST
Isoform —
PDB entities 20
Chains and sequence ranges Author chain M; PDBConstruct 1–434; UniProt 1–434

Ubiquitin carboxyl-terminal hydrolase RPN11

Saccharomyces cerevisiae S288c

UniProt P43588

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Model substrate polypeptide × 1 Ubiquitin-60S ribosomal protein L40 × 1 (P0CH08) ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPN11_YEAST
Isoform —
PDB entities 22
Chains and sequence ranges Author chain r; PDBConstruct 1–306; UniProt 1–306

Ubiquitin-60S ribosomal protein L40

Saccharomyces cerevisiae S288c

UniProt P0CH08

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 24 Proteasome subunit beta type-1 × 1 (P38624) Proteasome subunit beta type-2 × 1 (P25043) Proteasome subunit beta type-3 × 1 (P25451) Proteasome subunit beta type-4 × 1 (P22141) Proteasome subunit beta type-5 × 1 (P30656) Proteasome subunit beta type-6 × 1 (P23724) Proteasome subunit beta type-7 × 1 (P30657) Proteasome subunit alpha type-1 × 1 (P21243) Proteasome subunit alpha type-2 × 1 (P23639) Proteasome subunit alpha type-3 × 1 (P23638) Proteasome subunit alpha type-4 × 1 (P40303) Proteasome subunit alpha type-5 × 1 (P32379) Proteasome subunit alpha type-6 × 1 (P40302) Probable proteasome subunit alpha type-7 × 1 (P21242) 26S proteasome regulatory subunit 7 homolog × 1 (P33299) 26S proteasome regulatory subunit 4 homolog × 1 (P40327) 26S proteasome regulatory subunit 8 homolog × 1 (Q01939) 26S proteasome regulatory subunit 6B homolog × 1 (P33298) 26S proteasome subunit RPT4 × 1 (P53549) 26S proteasome regulatory subunit 6A × 1 (P33297) Proteasome subunit beta type-7 × 1 Ubiquitin carboxyl-terminal hydrolase RPN11 × 1 (P43588) Model substrate polypeptide × 1 ADENOSINE-5'-TRIPHOSPHATE × 4 ADENOSINE-5'-DIPHOSPHATE × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL40A_YEAST
Isoform —
PDB entities 24
Chains and sequence ranges Author chain u; PDBConstruct 1–128; UniProt 1–128

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6ef3
Deposition date deposition_date2018-08-15
Structure title titleYeast 26S proteasome bound to ubiquitinated substrate (4D motor state)
Keywords keywords26S Proteasome, ATPase, AAA+, Protease, Motor protein, Ubiquitin; MOTOR PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6ef3__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6ef3__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6ef3__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)61.40 Å
Rg (electron density)61.42 Å
Total Rg61.53 Å
Atom count44271
Residues5824
Excluded volume788030 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6ef3__assembly_1__model_1 24-meric (24) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (26)

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7. Citations (1)