7m2i

Structural Snapshots of Intermediates in the Gating of a K+ Channel

Method: X-RAY DIFFRACTION Dmax: 116.5 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

pH-gated potassium channel KcsA

Streptomyces lividans

UniProt P0A334

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 12 PDB declaration: dodecameric(12) Consistent with protein copy count Chain C; UniProt 26–116 Not recorded Monoclonal antibody (IgG) against KcsA, Fab heavy chain × 4 Monoclonal antibody (IgG) against KcsA, Fab light chain × 4 F09 NONAN-1-OL × 4 1EM (1S)-2-HYDROXY-1-[(NONANOYLOXY)METHYL]ETHYL MYRISTATE × 4 K POTASSIUM ION × 24 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 6;293 K;50 mM MES, pH 6.25, 28% PEG400, 50 mM magnesium acetate Resolution 2.69 Å R-free 0.251

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

86 other PDB entries and 96 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KCSA_STRLI
Isoform
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–91; UniProt 26–116

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7m2i

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7m2i
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7m2i
Deposition date deposition_date2021-03-16
Structure title titleStructural Snapshots of Intermediates in the Gating of a K+ Channel
Keywords keywordsIon channel, K+ channel, TRANSPORT PROTEIN-IMMUNE SYSTEM complex; TRANSPORT PROTEIN/IMMUNE SYSTEM
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier28.84
Radius of gyration Rg (electron density) rg_electron29.29
Forward intensity I(0) i049882800.00
Molecular weight molecular_weight56669.0 kDa
Excluded volume excluded_volume71373 ų
Envelope volume envelope_volume92506 ų
Hydration-shell volume shell_volume28327 ų
Envelope diameter envelope_diameter120.7
Shell Rg shell_rg33.92
Envelope Rg envelope_rg30.13
Shape Rg shape_rg29.20
Total Rg total_rg30.03
Total atoms total_atoms3985
Residues n_residues526
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax116.5
Rg (real space) rg_real29.20
Rg uncertainty (real space) rg_real_error1.31
I(0) (real space) i0_real4.9880e+07
I(0) uncertainty (real space) i0_real_error8.7150e+05
Rg (reciprocal space) rg_reciprocal29.05
I(0) (reciprocal space) i0_reciprocal49880000.0000
Solution quality estimate total_estimate0.7333
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary29.6
Skewness Skewness skewness0.783
Kurtosis Kurtosis kurtosis0.591
Angular range angular_range— – 0.2750 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha8650000.0000
Real-space data points n_real_points56
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.411; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.312; Smooth: 0.983

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (7)

7. Fold Classification (SCOP + CATH) 4 domains

CATH v4.4 (4 domains)

Domain ID domain_id7m2iA01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id7m2iA02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id7m2iB01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id7m2iB02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins

8. Citations (1)

9. Files and Curves (10)