SAXSdb — 7pbj

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1. Protein Identity and Related Structures Protein Identity & Related Structures

60 kDa chaperonin

Escherichia coli (strain K12)

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 21	10 kDa chaperonin × 7 （P0A6F9） ADENOSINE-5'-DIPHOSPHATE × 14 MAGNESIUM ION × 14 water × 7	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	CH60_ECOLI
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain Ad； PDBConstruct 1–524； UniProt 2–525 Author chain Ae； PDBConstruct 1–524； UniProt 2–525 Author chain Ak； PDBConstruct 1–524； UniProt 2–525 Author chain Al； PDBConstruct 1–524； UniProt 2–525 Author chain Ar； PDBConstruct 1–524； UniProt 2–525 Author chain As； PDBConstruct 1–524； UniProt 2–525 Author chain Ay； PDBConstruct 1–524； UniProt 2–525 Author chain Az； PDBConstruct 1–524； UniProt 2–525 Author chain Bf； PDBConstruct 1–524； UniProt 2–525 Author chain Bg； PDBConstruct 1–524； UniProt 2–525 Author chain Bm； PDBConstruct 1–524； UniProt 2–525 Author chain Bn； PDBConstruct 1–524； UniProt 2–525 Author chain Bt； PDBConstruct 1–524； UniProt 2–525 Author chain Bu； PDBConstruct 1–524； UniProt 2–525

10 kDa chaperonin

Escherichia coli (strain K12)

UniProt P0A6F9

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein heterocomplex	Heteromer	Protein 21	60 kDa chaperonin × 14 （P0A6F5） ADENOSINE-5'-DIPHOSPHATE × 14 MAGNESIUM ION × 14 water × 7	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	CH10_ECOLI
Isoform	—
PDB entities	2
Chains and sequence ranges	Author chain Af； PDBConstruct 1–97； UniProt 1–97 Author chain Am； PDBConstruct 1–97； UniProt 1–97 Author chain At； PDBConstruct 1–97； UniProt 1–97 Author chain Ba； PDBConstruct 1–97； UniProt 1–97 Author chain Bh； PDBConstruct 1–97； UniProt 1–97 Author chain Bo； PDBConstruct 1–97； UniProt 1–97 Author chain Bv； PDBConstruct 1–97； UniProt 1–97

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	7pbj
Deposition date deposition_date	2021-08-02
Structure title title	Cryo-EM structure of the GroEL-GroES complex with ADP bound to both rings ("wide" conformation).
Keywords keywords	cryo-EM, chaperonin, GroEL, GroEL-GroES, CHAPERONE; CHAPERONE
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7pbj__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7pbj__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

7pbj__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	69.67 Å
Rg (electron density)	69.54 Å
Total Rg	69.55 Å
Atom count	59472
Residues	8015
Excluded volume	1063900 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`7pbj__assembly_1__model_1`	21-meric （21）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (5)

Entity 1 Entity 1 polymer

Description description	60 kDa chaperonin
Molecular weight formula_weight	55220.1 kDa
Source method src_method	man
Copy count entity_count	14

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	Ad,Ae,Ak,Al,Ar,As,Ay,Az,Bf,Bg,Bm,Bn,Bt,Bu
Atom count atom_count	59486

AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLP

Source Source

Source organism organism	Escherichia coli (strain K12)
NCBI taxonomy ID ncbi_taxonomy_id	83333
Host organism host_organism	Escherichia coli str. K-12 substr. W3110

Entity 2 Entity 2 polymer

Description description	10 kDa chaperonin
Molecular weight formula_weight	10400.9 kDa
Source method src_method	man
Copy count entity_count	7

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	Af,Am,At,Ba,Bh,Bo,Bv

MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA

Source Source

Source organism organism	Escherichia coli (strain K12)
NCBI taxonomy ID ncbi_taxonomy_id	83333
Host organism host_organism	Escherichia coli str. K-12 substr. W3110

Entity 3 Entity 3 non-polymer

Description description	ADENOSINE-5'-DIPHOSPHATE
Molecular weight formula_weight	427.2 kDa
Source method src_method	syn
Copy count entity_count	14

Entity 4 Entity 4 non-polymer

Description description	MAGNESIUM ION
Molecular weight formula_weight	24.3 kDa
Source method src_method	syn
Copy count entity_count	14

Entity 5 Entity 5 water

Description description	water
Molecular weight formula_weight	18.0 kDa
Source method src_method	nat
Copy count entity_count	14

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	3.40 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	41000

Cryo-EM structure of the GroEL-GroES complex with ADP bound to both rings ("wide" conformation).

1. Protein Identity and Related Structures Protein Identity & Related Structures

60 kDa chaperonin

State in the Current Structure

Other States of the Same Protein in the Database

10 kDa chaperonin

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

7pbj__assembly_1__model_1

7pbj__assembly_1__model_1 | I(q)

7pbj__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (5)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 polymer

Polymer Polymer

Source Source

Entity 3 Entity 3 non-polymer

Entity 4 Entity 4 non-polymer

Entity 5 Entity 5 water

7. Citations (1)

Cryo-EM structure of the GroEL-GroES complex with ADP bound to both rings ("wide" conformation).

1. Protein Identity and Related Structures Protein Identity & Related Structures

60 kDa chaperonin

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

10 kDa chaperonin

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

7pbj__assembly_1__model_1

7pbj__assembly_1__model_1 | I(q)

7pbj__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (5)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 polymer

Polymer Polymer

Source Source

Entity 3 Entity 3 non-polymer

Entity 4 Entity 4 non-polymer

Entity 5 Entity 5 water

7. Citations (1)