Glycophorin-A
物种未注明
当前结构中的状态
| Assembly | 聚集状态 | 构建体 | 突变与修饰 | 配体、离子与共同组分 | 实验方法与环境 | 结构质量 |
|---|---|---|---|---|---|---|
| 1 | 其他组合 异源复合物 蛋白 × 4 其他聚合物 2 PDB 声明:tetrameric(4) 与蛋白拷贝数一致 | 链 B; UniProt 1–150 链 D; UniProt 1–150 | 未记录 | Band 3 anion transport protein × 2 (P02730) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose × 2 CLR CHOLESTEROL × 2 PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 2 | ELECTRON MICROSCOPY cryo-EM缓冲液:pH 7.4;Final gel filtration buffer contained 0.05% w/v digitonin, 130 mM KCl, 20 mM HEPES, pH 7.4, 1 mM ATP, 1 mM MgCl2, 1 mM PMSF. Peak fractions were concentrated to 8 mg/mL, and 0.01% w/v glycyrrhizic acid was added immediately prior to vitrification. cryo-EM玻璃化条件:冷冻剂 ETHANE;4-6 seconds, wait time 30 seconds. | 分辨率 3.30 Å |
数据库中的同蛋白其他状态
以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly, “相对当前条目”直接指出证据层面的不同;没有差异标签表示当前已读取字段一致。
| 其他 PDB | 相对当前条目 7V19 | Assembly / 聚集状态 | 构建体 | 突变与修饰 | 配体、离子与非聚合物 | 实验方法与环境 | 结构质量 |
|---|---|---|---|---|---|---|---|
| 1AFO DIMERIC TRANSMEMBRANE DOMAIN OF HUMAN GLYCOPHORIN A, NMR, 20 STRUCTURES 提交 1997-03-11 | 构建体不同 聚集状态不同 配体/离子不同 实验方法不同 实验环境不同 结构质量不同 | Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric |
链 A
81–120(40 aa)
片段:TRANSMEMBRANE PEPTIDE
链 B
81–120(40 aa)
片段:TRANSMEMBRANE PEPTIDE
|
未记录 | 未记录非水小分子 |
SOLUTION NMR
NMR测量条件
pH 6;313 K
|
分辨率未提供 |
| 2KPE Refined structure of Glycophorin A transmembrane segment dimer in DPC micelles 提交 2009-10-13 | 构建体不同 聚集状态不同 配体/离子不同 实验方法不同 实验环境不同 结构质量不同 | Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric |
链 A
89–117(29 aa)
片段:transmembrane segment (UNP residues 89-117)
链 B
89–117(29 aa)
片段:transmembrane segment (UNP residues 89-117)
|
未记录 | 未记录非水小分子 |
SOLUTION NMR
NMR测量条件
pH 5.5;313 K;离子强度(mmCIF原始值)0;压力 ambient
NMR样品组成
3 mM [U-100% 13C; U-100% 15N] GpA, 3 mM GpA, 180 mM [U-2H] DPC, 95% H2O/5% D2O | 95% H2O/5% D2O
|
分辨率未提供 |
| 2KPF Spatial structure of the dimeric transmembrane domain of glycophorin A in bicelles soluton 提交 2009-10-13 | 构建体不同 聚集状态不同 配体/离子不同 实验方法不同 实验环境不同 结构质量不同 | Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric |
链 A
80–117(38 aa)
片段:transmembrane domain (UNP residues 80-117)
链 B
80–117(38 aa)
片段:transmembrane domain (UNP residues 80-117)
|
未记录 | 未记录非水小分子 |
SOLUTION NMR
NMR测量条件
pH 5.5;313 K;离子强度(mmCIF原始值)0;压力 ambient
NMR样品组成
1mM unlabeled Glycophorin A, 1mM 13-C/15-N labeled Glycophorin A, 16mM DMPC d-54, 64 mM DHPC d-22, 95% H2O/5% D2O | 95% H2O/5% D2O
|
分辨率未提供 |
| 5EH4 Crystal Structure of the Glycophorin A Transmembrane Dimer in Lipidic Cubic Phase 提交 2015-10-28 | 构建体不同 突变/修饰不同 聚集状态不同 配体/离子不同 实验方法不同 实验环境不同 结构质量不同 | Assembly 1 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric |
链 A
89–117(29 aa)
片段:unp residues 89-117
链 B
89–117(29 aa)
片段:unp residues 89-117
|
突变:M81I 非标准单体:是(mmCIF未提供具体位点) 突变:M81I 非标准单体:是(mmCIF未提供具体位点) | OLB (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate × 1 |
X-RAY DIFFRACTION
X-ray结晶条件
LIPIDIC CUBIC PHASE;293 K;20% (w/v)PEG 8000, 0.1 M sodium HEPES pH 7.5
10 mM TRIS-HCl pH 8, 40 mM NaCl
|
分辨率 2.81 Å R-free 0.260 |
| 5EH4 Crystal Structure of the Glycophorin A Transmembrane Dimer in Lipidic Cubic Phase 提交 2015-10-28 | 构建体不同 突变/修饰不同 聚集状态不同 配体/离子不同 实验方法不同 实验环境不同 结构质量不同 | Assembly 2 蛋白同源多聚体 同源多聚体;蛋白 × 2 PDB 声明:dimeric |
链 C
89–117(29 aa)
片段:unp residues 89-117
链 D
89–117(29 aa)
片段:unp residues 89-117
|
突变:M81I 非标准单体:是(mmCIF未提供具体位点) 突变:M81I 非标准单体:是(mmCIF未提供具体位点) | 未记录非水小分子 |
X-RAY DIFFRACTION
X-ray结晶条件
LIPIDIC CUBIC PHASE;293 K;20% (w/v)PEG 8000, 0.1 M sodium HEPES pH 7.5
10 mM TRIS-HCl pH 8, 40 mM NaCl
|
分辨率 2.81 Å R-free 0.260 |
| 5EH6 Crystal Structure of the Glycophorin A Transmembrane Monomer in Lipidic Cubic Phase 提交 2015-10-28 | 构建体不同 突变/修饰不同 聚集状态不同 配体/离子不同 实验方法不同 实验环境不同 结构质量不同 | Assembly 1 蛋白单体 单体;蛋白 × 1 PDB 声明:monomeric |
链 A
89–117(29 aa)
片段:unp resideus 89-117
|
突变:M100I 非标准单体:是(mmCIF未提供具体位点) | 未记录非水小分子 |
X-RAY DIFFRACTION
X-ray结晶条件
LIPIDIC CUBIC PHASE;pH 7.5;293 K;0.1 M HEPES, 20% PEG8000, 10 mM Tris, 40 mM NaCl
|
分辨率 1.92 Å R-free 0.238 |
| 7UZ3 Band 3-Glycophorin A complex, outward facing 提交 2022-05-08 | 配体/离子不同 实验环境不同 结构质量不同 | Assembly 1 其他组合 异源复合物;蛋白 × 4 PDB 声明:tetrameric |
链 B
1–150(150 aa)
链 D
1–150(150 aa)
|
未记录 | CLR CHOLESTEROL × 4 PLC DIUNDECYL PHOSPHATIDYL CHOLINE × 2 PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 2 |
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;Final gel filtration buffer contained 0.05 % (w/v) digitonin, 130mM KCl, 20mM HEPES pH 7.4, 1mM ATP, 1mM MgCl2, 1mM PMSF. Peak fractions were concentrated to 8mg/mL, and 0.01% (w/v) of glycyrrhizic acid was added immediately prior to vitrification.
cryo-EM玻璃化条件
冷冻剂 ETHANE;4-6 seconds, wait time 30 seconds.
|
分辨率 2.35 Å |
| 7V07 Band 3-I-TM local refinement from erythrocyte ankyrin-1 complex consensus reconstruction 提交 2022-05-10 | 配体/离子不同 实验环境不同 结构质量不同 | Assembly 1 其他组合 异源复合物;蛋白 × 4 PDB 声明:tetrameric |
链 B
1–150(150 aa)
链 D
1–150(150 aa)
|
未记录 | CLR CHOLESTEROL × 4 PLC DIUNDECYL PHOSPHATIDYL CHOLINE × 2 PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 2 |
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;Final gel filtration buffer contained 0.05% w/v digitonin, 130 mM KCl, 20 mM HEPES, pH 7.4, 1 mM ATP, 1 mM MgCl2, 1 mM PMSF. Peak fractions were concentrated to 8 mg/mL and 0.01% ( w/v glycyrrhizic acid was added immediately prior to vitrification.
cryo-EM玻璃化条件
冷冻剂 ETHANE;4-6 seconds, wait time 30 seconds
|
分辨率 2.80 Å |
| 7V0K Consensus refinement of human erythrocyte ankyrin-1 complex (Composite map) 提交 2022-05-10 | 聚集状态不同 配体/离子不同 实验环境不同 结构质量不同 | Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 10 PDB 声明:decameric |
链 D
1–150(150 aa)
链 N
1–150(150 aa)
|
未记录 | CLR CHOLESTEROL × 6 AJP Digitonin × 2 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 PLC DIUNDECYL PHOSPHATIDYL CHOLINE × 2 PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 2 |
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;Final gel filtration buffer contained 0.05% w/v digitonin, 130 mM KCl, 20 mM HEPES, pH 7.4, 1 mM ATP, 1 mM MgCl2, 1 mM PMSF. Peak fractions were concentrated to 8 mg/mL, and 0.01% w/v glycyrrhizic acid was added immediately prior to vitrification.
cryo-EM玻璃化条件
冷冻剂 ETHANE;4-6 seconds, wait time 30 seconds
|
分辨率 2.40 Å |
| 8CRQ Local refinement of Band 3-I transmembrane domains, class 1 of erythrocyte ankyrin-1 complex 提交 2022-05-11 | 结构质量不同 | Assembly 1 其他组合 异源复合物;蛋白 × 4 PDB 声明:tetrameric |
链 B
1–150(150 aa)
链 D
1–150(150 aa)
|
未记录 | CLR CHOLESTEROL × 2 PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 2 |
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;Final gel filtration buffer contained 0.05% w/v digitonin, 130 mM KCl, 20 mM HEPES, pH 7.4, 1 mM ATP, 1 mM MgCl2, 1 mM PMSF. Peak fractions were concentrated to 8 mg/mL, and 0.01% w/v glycyrrhizic acid was added immediately prior to vitrification.
cryo-EM玻璃化条件
冷冻剂 ETHANE;4-6 seconds, wait time 30 seconds.
|
分辨率 3.20 Å |
| 8CRR Local refinement of Band 3-III transmembrane domains, class 1 of erythrocyte ankyrin-1 complex 提交 2022-05-11 | 结构质量不同 | Assembly 1 其他组合 异源复合物;蛋白 × 4 PDB 声明:tetrameric |
链 B
1–150(150 aa)
链 D
1–150(150 aa)
|
未记录 | CLR CHOLESTEROL × 2 PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 2 |
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;Final gel filtration buffer contained 0.05% w/v digitonin, 130 mM KCl, 20 mM HEPES, pH 7.4, 1 mM ATP, 1 mM MgCl2, 1 mM PMSF. Peak fractions were concentrated to 8 mg/mL, and 0.01% w/v glycyrrhizic acid was added immediately prior to vitrification.
cryo-EM玻璃化条件
冷冻剂 ETHANE;4-6 seconds, wait time 30 seconds.
|
分辨率 3.00 Å |
| 8CRT Local refinement of Rh trimer, glycophorin B and Band3-III transmembrane region, class 1a of erythrocyte ankyrin-1 complex 提交 2022-05-11 | 聚集状态不同 配体/离子不同 结构质量不同 | Assembly 1 其他组合 异源复合物;蛋白 × 8 PDB 声明:octameric |
链 B
1–150(150 aa)
链 D
1–150(150 aa)
|
未记录 | CLR CHOLESTEROL × 2 |
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;Final gel filtration buffer contained 0.05% w/v digitonin, 130 mM KCl, 20 mM HEPES, pH 7.4, 1 mM ATP, 1 mM MgCl2, 1 mM PMSF. Peak fractions were concentrated to 8 mg/mL, and 0.01% w/v glycyrrhizic acid was added immediately prior to vitrification.
cryo-EM玻璃化条件
冷冻剂 ETHANE;4-6 seconds, wait time 30 seconds.
|
分辨率 3.00 Å |
| 8CS9 Composite reconstruction of Class 1 of the erythrocyte ankyrin-1 complex 提交 2022-05-12 | 构建体不同 突变/修饰不同 聚集状态不同 配体/离子不同 实验环境不同 结构质量不同 | Assembly 1 其他组合 异源复合物;蛋白 × 18 PDB 声明:octadecameric |
链 R
1–150(150 aa)
链 S
1–150(150 aa)
链 T
1–150(150 aa)
链 a
1–150(150 aa)
链 b
1–150(150 aa)
链 c
1–150(150 aa)
|
未记录 | CLR CHOLESTEROL × 8 AJP Digitonin × 1 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6 PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 6 |
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;Final gel filtration buffer contained 0.05% w/v digitonin, 130 mM KCl, 20 mM HEPES, pH 7.4, 1 mM ATP, 1 mM MgCl2, 1 mM PMSF. Peak fractions were concentrated to 8 mg/mL, and 0.01% w/v glycyrrhizic acid was added immediately prior to vitrification.
cryo-EM玻璃化条件
冷冻剂 ETHANE;4-6 seconds, wait time 30 seconds
|
分辨率 2.74 Å |
| 8CSL Sub-tomogram averaging of erythrocyte ankyrin-1 complex 提交 2022-05-12 | 构建体不同 突变/修饰不同 聚集状态不同 配体/离子不同 实验环境不同 结构质量不同 | Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 19 PDB 声明:nonadecameric |
链 R
1–150(150 aa)
链 S
1–150(150 aa)
链 T
1–150(150 aa)
链 a
1–150(150 aa)
链 b
1–150(150 aa)
链 c
1–150(150 aa)
|
未记录 | 未记录非水小分子 |
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;130 mM KCl, 10 mM HEPES, pH 7.4
cryo-EM玻璃化条件
冷冻剂 ETHANE
|
分辨率 25.00 Å |
| 8CT3 Local refinement of band3-I transmembrane region from class 2 of erythrocyte ankyrin-1 complex 提交 2022-05-13 | 聚集状态不同 配体/离子不同 实验环境不同 | Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 4 PDB 声明:tetrameric |
链 B
1–150(150 aa)
链 D
1–150(150 aa)
|
未记录 | CLR CHOLESTEROL × 4 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 2 |
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;Final gel filtration buffer contained 0.05% w/v digitonin, 130 mM KCl, 20 mM HEPES, pH 7.4, 1 mM ATP, 1 mM MgCl2, 1 mM PMSF. Peak fractions were concentrated to 8 mg/mL, and 0.01% w/v glycyrrhizic acid was added immediately prior to vitrification.
cryo-EM玻璃化条件
冷冻剂 ETHANE;4-6 seconds, wait time 30 seconds
|
分辨率 3.30 Å |
| 8CTE Class 2 of erythrocyte ankyrin-1 complex (Composite map) 提交 2022-05-14 | 聚集状态不同 配体/离子不同 实验环境不同 结构质量不同 | Assembly 1 蛋白异源复合物 异源复合物;蛋白 × 14 PDB 声明:tetradecameric |
链 D
1–150(150 aa)
链 N
1–150(150 aa)
|
未记录 | CLR CHOLESTEROL × 10 AJP Digitonin × 2 NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 2 PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 2 |
ELECTRON MICROSCOPY
cryo-EM缓冲液
pH 7.4;Final gel filtration buffer contained 0.05% w/v digitonin, 130 mM KCl, 20 mM HEPES, pH 7.4, 1 mM ATP, 1 mM MgCl2, 1 mM PMSF. Peak fractions were concentrated to 8 mg/mL, and 0.01% w/v glycyrrhizic acid was added immediately prior to vitrification.
cryo-EM玻璃化条件
冷冻剂 ETHANE;4-6 seconds, wait time 30 seconds
|
分辨率 2.90 Å |
共 15 个其他 PDB 条目、16 个 assembly。 打开独立比较页并筛选聚集状态
查看构建体与数据证据
| UniProt名称 | GLPA_HUMAN |
| Isoform | — |
| PDB实体 | 1 |
| 链与序列区间 | 作者链 B; PDB构建体 1–150; UniProt 1–150 作者链 D; PDB构建体 1–150; UniProt 1–150 |