7tw6

Cryo-EM structure of human ankyrin complex (B4P1A1) from red blood cell

Method: ELECTRON MICROSCOPY Dmax: 217.8 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Band 3 anion transport protein

OrganismNot specified

UniProt P02730

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain A; UniProt 1–911 Chain B; UniProt 1–911 Chain J; UniProt 1–911 Chain K; UniProt 1–911 Not recorded Protein 4.2 × 1 (P16452) Ankyrin-1 × 1 (P16157) ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 5.60 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

53 other PDB entries and 56 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name B3AT_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–911; UniProt 1–911 Author chain B; PDBConstruct 1–911; UniProt 1–911 Author chain J; PDBConstruct 1–911; UniProt 1–911 Author chain K; PDBConstruct 1–911; UniProt 1–911

Protein 4.2

OrganismNot specified

UniProt P16452

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain E; UniProt 1–691 Not recorded Band 3 anion transport protein × 4 (P02730) Ankyrin-1 × 1 (P16157) ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 5.60 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

12 other PDB entries and 12 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name EPB42_HUMAN
Isoform
PDB entities 2
Chains and sequence ranges Author chain E; PDBConstruct 1–691; UniProt 1–691

Ankyrin-1

OrganismNot specified

UniProt P16157

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 6 PDB declaration: hexameric(6) Consistent with protein copy count Chain G; UniProt 1–1881 Not recorded Band 3 anion transport protein × 4 (P02730) Protein 4.2 × 1 (P16452) ELECTRON MICROSCOPY cryo-EM buffer:pH 7.5 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 5.60 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

20 other PDB entries and 30 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ANK1_HUMAN
Isoform
PDB entities 3
Chains and sequence ranges Author chain G; PDBConstruct 1–1881; UniProt 1–1881

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7tw6

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7tw6
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2. Structure Basics 2. Structure Basics

Entry ID entry_id7tw6
Deposition date deposition_date2022-02-06
Structure title titleCryo-EM structure of human ankyrin complex (B4P1A1) from red blood cell
Keywords keywordsRed blood cell, Ankyrin complex, membrane protein, band 3, protein 4.2; MEMBRANE PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier78.50
Radius of gyration Rg (electron density) rg_electron79.70
Forward intensity I(0) i01942920000.00
Molecular weight molecular_weight385190.0 kDa
Excluded volume excluded_volume487980 ų
Envelope volume envelope_volume861050 ų
Hydration-shell volume shell_volume101230 ų
Envelope diameter envelope_diameter280.0
Shell Rg shell_rg64.12
Envelope Rg envelope_rg77.96
Shape Rg shape_rg79.76
Total Rg total_rg79.15
Total atoms total_atoms27184
Residues n_residues3515
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax217.8
Rg (real space) rg_real75.72
Rg uncertainty (real space) rg_real_error1.20
I(0) (real space) i0_real1.8990e+09
I(0) uncertainty (real space) i0_real_error3.3890e+07
Rg (reciprocal space) rg_reciprocal74.55
I(0) (reciprocal space) i0_reciprocal1923000000.0000
Solution quality estimate total_estimate0.8202
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary54.4
Skewness Skewness skewness0.505
Kurtosis Kurtosis kurtosis-0.690
Angular range angular_range— – 0.1000 −1
Current regularization parameter α current_alpha0.0642
Highest regularization parameter α highest_alpha65280000.0000
Real-space data points n_real_points21
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.724; Stabil: 0.959; Sysdev: 1.000; Positv: 1.000; Valcen: 0.882; Smooth: 0.249

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)