8e41

E. coli 50S ribosome bound to tiamulin and VS1

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

50S ribosomal protein L2

Escherichia coli

UniProt P60422

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 9 RNA 2 50S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L15 × 1 (A0A037Y8L6) 50S ribosomal protein L4 × 1 (A0A7U9FY55) 50S ribosomal protein L3 × 1 (P60438) 50S ribosomal protein L13 × 1 (S1EW51) 50S ribosomal protein L22 × 1 (P61175) 50S ribosomal protein L32 × 1 (A0A828UBL8) 50S ribosomal protein L34 × 1 (B7MGC4) VIRGINIAMYCIN S1 × 1 TIAMULIN × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL2_ECOLI
Isoform —
PDB entities 3
Chains and sequence ranges Author chain K; PDBConstruct 1–271; UniProt 2–272

50S ribosomal protein L15

Escherichia coli

UniProt A0A037Y8L6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 9 RNA 2 50S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (P60422) 50S ribosomal protein L4 × 1 (A0A7U9FY55) 50S ribosomal protein L3 × 1 (P60438) 50S ribosomal protein L13 × 1 (S1EW51) 50S ribosomal protein L22 × 1 (P61175) 50S ribosomal protein L32 × 1 (A0A828UBL8) 50S ribosomal protein L34 × 1 (B7MGC4) VIRGINIAMYCIN S1 × 1 TIAMULIN × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A037Y8L6_ECOLX
Isoform —
PDB entities 4
Chains and sequence ranges Author chain L; PDBConstruct 1–144; UniProt 1–144

50S ribosomal protein L4

Escherichia coli

UniProt A0A7U9FY55

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 9 RNA 2 50S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (P60422) 50S ribosomal protein L15 × 1 (A0A037Y8L6) 50S ribosomal protein L3 × 1 (P60438) 50S ribosomal protein L13 × 1 (S1EW51) 50S ribosomal protein L22 × 1 (P61175) 50S ribosomal protein L32 × 1 (A0A828UBL8) 50S ribosomal protein L34 × 1 (B7MGC4) VIRGINIAMYCIN S1 × 1 TIAMULIN × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A7U9FY55_ECOLX
Isoform —
PDB entities 5
Chains and sequence ranges Author chain M; PDBConstruct 1–201; UniProt 1–201

50S ribosomal protein L3

Escherichia coli

UniProt P60438

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 9 RNA 2 50S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (P60422) 50S ribosomal protein L15 × 1 (A0A037Y8L6) 50S ribosomal protein L4 × 1 (A0A7U9FY55) 50S ribosomal protein L13 × 1 (S1EW51) 50S ribosomal protein L22 × 1 (P61175) 50S ribosomal protein L32 × 1 (A0A828UBL8) 50S ribosomal protein L34 × 1 (B7MGC4) VIRGINIAMYCIN S1 × 1 TIAMULIN × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL3_ECOLI
Isoform —
PDB entities 6
Chains and sequence ranges Author chain N; PDBConstruct 1–209; UniProt 1–209

50S ribosomal protein L13

Escherichia coli

UniProt S1EW51

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 9 RNA 2 50S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (P60422) 50S ribosomal protein L15 × 1 (A0A037Y8L6) 50S ribosomal protein L4 × 1 (A0A7U9FY55) 50S ribosomal protein L3 × 1 (P60438) 50S ribosomal protein L22 × 1 (P61175) 50S ribosomal protein L32 × 1 (A0A828UBL8) 50S ribosomal protein L34 × 1 (B7MGC4) VIRGINIAMYCIN S1 × 1 TIAMULIN × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name S1EW51_ECOLX
Isoform —
PDB entities 7
Chains and sequence ranges Author chain O; PDBConstruct 1–142; UniProt 1–142

50S ribosomal protein L22

Escherichia coli

UniProt P61175

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 9 RNA 2 50S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (P60422) 50S ribosomal protein L15 × 1 (A0A037Y8L6) 50S ribosomal protein L4 × 1 (A0A7U9FY55) 50S ribosomal protein L3 × 1 (P60438) 50S ribosomal protein L13 × 1 (S1EW51) 50S ribosomal protein L32 × 1 (A0A828UBL8) 50S ribosomal protein L34 × 1 (B7MGC4) VIRGINIAMYCIN S1 × 1 TIAMULIN × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL22_ECOLI
Isoform —
PDB entities 8
Chains and sequence ranges Author chain P; PDBConstruct 1–110; UniProt 1–110

50S ribosomal protein L32

Escherichia coli

UniProt A0A828UBL8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 9 RNA 2 50S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (P60422) 50S ribosomal protein L15 × 1 (A0A037Y8L6) 50S ribosomal protein L4 × 1 (A0A7U9FY55) 50S ribosomal protein L3 × 1 (P60438) 50S ribosomal protein L13 × 1 (S1EW51) 50S ribosomal protein L22 × 1 (P61175) 50S ribosomal protein L34 × 1 (B7MGC4) VIRGINIAMYCIN S1 × 1 TIAMULIN × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A828UBL8_ECOLX
Isoform —
PDB entities 9
Chains and sequence ranges Author chain Q; PDBConstruct 1–56; UniProt 2–57

50S ribosomal protein L34

Escherichia coli

UniProt B7MGC4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 9 RNA 2 50S ribosomal RNA × 1 5S ribosomal RNA × 1 50S ribosomal protein L2 × 1 (P60422) 50S ribosomal protein L15 × 1 (A0A037Y8L6) 50S ribosomal protein L4 × 1 (A0A7U9FY55) 50S ribosomal protein L3 × 1 (P60438) 50S ribosomal protein L13 × 1 (S1EW51) 50S ribosomal protein L22 × 1 (P61175) 50S ribosomal protein L32 × 1 (A0A828UBL8) VIRGINIAMYCIN S1 × 1 TIAMULIN × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RL34_ECO45
Isoform —
PDB entities 10
Chains and sequence ranges Author chain R; PDBConstruct 1–46; UniProt 1–46

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8e41
Deposition date deposition_date2022-08-17
Structure title titleE. coli 50S ribosome bound to tiamulin and VS1
Keywords keywordsE. coli ribosome, antibiotics, RIBOSOME; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8e41__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8e41__assembly_1__model_1 | I(q)

10-2 10-1 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8e41__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)68.54 Å
Rg (electron density)68.20 Å
Total Rg68.34 Å
Atom count116059
Residues4176
Excluded volume1076400 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8e41__assembly_1__model_1 undecameric (11) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (12)

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7. Citations (1)