← Back to search
8jiv

Atomic structure of wheat ribosome reveals unique features of the plant ribosomes

Method: ELECTRON MICROSCOPY Dmax: 273.5 Å Quality: REASONABLE
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Ribosomal protein L2 C-terminal domain-containing protein

OrganismNot specified

UniProt W5ECL2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CA； UniProt 1–261 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain DA 1–261（261 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain DA 1–261（261 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain DA 1–261（261 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name W5ECL2_WHEAT
Isoform —
PDB entities 4
Chains and sequence ranges Author chain CA； PDBConstruct 1–261； UniProt 1–261

Ribosomal protein L3

OrganismNot specified

UniProt Q7X744

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CB； UniProt 1–385 Non-standard monomer：Yes (specific site not provided by mmCIF) 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
4V3P The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes Deposited 2014-10-20 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 1863 PDB declaration: 2001-meric
Chain LC 1–389（389 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 25MM HEPES-KOH, 3MM MG(OAC)2, 85MM KOAC,1.6MM DTT, 0.25MM SPERMIDINE；pH 7.6；25MM HEPES-KOH, 3MM MG(OAC)2, 85MM KOAC,1.6MM DTT, 0.25MM SPERMIDINE
cryo-EM vitrification conditions Cryogen ETHANE；VITRIFICATION 1 --CRYOGEN- ETHANE, HUMIDITY-95, TEMPERATURE- 120,INSTRUMENT- FEI VITROBOT MARK IV, METHOD- 3UL OF SAMPLE APPLIED ON 300 MESH HOLY CARBON QUANTIFOIL GRID. BLOTTING WAS DONE IN VITROBOT MARK IV, BLOT TIME 0.5 SEC, BLOT FORCE 5
Resolution 34.00 Å
4V7E Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome Deposited 2013-11-22 Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 82 PDB declaration: 88-meric
Chain CB 1–389（389 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol；pH 7.5；20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol
cryo-EM vitrification conditions Blot for 10 seconds before plunging, use 2 layers of filter paper；Cryogen ETHANE；Blot for 10 seconds (using 2 layers of filter paper) before plunging into liquid ethane (FEI VITROBOT).
Resolution 5.50 Å

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q7X744_WHEAT
Isoform —
PDB entities 5
Chains and sequence ranges Author chain CB； PDBConstruct 1–385； UniProt 1–385

Ribosomal protein L5 eukaryotic C-terminal domain-containing protein

OrganismNot specified

UniProt A0A3B6DD91

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CD； UniProt 1–307 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A3B6DD91_WHEAT
Isoform —
PDB entities 7
Chains and sequence ranges Author chain CD； PDBConstruct 1–307； UniProt 1–307

60S ribosomal protein L6

OrganismNot specified

UniProt A0A3B6QGW3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CE； UniProt 1–232 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain LB 14–232（219 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain LB 14–232（219 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain LB 14–232（219 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3B6QGW3_WHEAT
Isoform —
PDB entities 8
Chains and sequence ranges Author chain CE； PDBConstruct 1–232； UniProt 1–232

60S ribosomal protein uL30

OrganismNot specified

UniProt A0A3B6DM38

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CF； UniProt 1–244 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain CB 1–244（244 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain CB 1–244（244 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain CB 1–244（244 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3B6DM38_WHEAT
Isoform —
PDB entities 9
Chains and sequence ranges Author chain CF； PDBConstruct 1–244； UniProt 1–244

60S ribosomal protein L7a

OrganismNot specified

UniProt A0A3B6RED0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CG； UniProt 1–258 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain AA 1–258（258 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain AA 1–258（258 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain AA 1–258（258 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3B6RED0_WHEAT
Isoform —
PDB entities 10
Chains and sequence ranges Author chain CG； PDBConstruct 1–258； UniProt 1–258

Ribosomal protein L6 alpha-beta domain-containing protein

OrganismNot specified

UniProt A0A077RTE5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CH； UniProt 1–189 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A077RTE5_WHEAT
Isoform —
PDB entities 11
Chains and sequence ranges Author chain CH； PDBConstruct 1–189； UniProt 1–189

Ribosomal protein L10e/L16 domain-containing protein

OrganismNot specified

UniProt A0A3B6HUM3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CI； UniProt 1–217 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain HB 1–217（217 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain HB 1–217（217 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain HB 1–217（217 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3B6HUM3_WHEAT
Isoform —
PDB entities 12
Chains and sequence ranges Author chain CI； PDBConstruct 1–217； UniProt 1–217

60S ribosomal protein L11

OrganismNot specified

UniProt A0A3B5XX39

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CJ； UniProt 1–180 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain EA 1–180（180 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain EA 1–180（180 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain EA 1–180（180 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3B5XX39_WHEAT
Isoform —
PDB entities 13
Chains and sequence ranges Author chain CJ； PDBConstruct 1–180； UniProt 1–180

60S ribosomal protein L13

OrganismNot specified

UniProt A0A3B6QBU0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CL； UniProt 1–208 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A3B6QBU0_WHEAT
Isoform —
PDB entities 14
Chains and sequence ranges Author chain CL； PDBConstruct 1–208； UniProt 1–208

Ribosomal protein L14e domain-containing protein

OrganismNot specified

UniProt A0A3B6DGT8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CM； UniProt 1–135 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain XA 1–135（135 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain XA 1–135（135 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain XA 1–135（135 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3B6DGT8_WHEAT
Isoform —
PDB entities 15
Chains and sequence ranges Author chain CM； PDBConstruct 1–135； UniProt 1–135

Ribosomal protein L15

OrganismNot specified

UniProt W5FEX7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CN； UniProt 1–204 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain HA 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain HA 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain HA 1–204（204 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name W5FEX7_WHEAT
Isoform —
PDB entities 16
Chains and sequence ranges Author chain CN； PDBConstruct 1–204； UniProt 1–204

Ribosomal protein L13a

OrganismNot specified

UniProt Q5I7L1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CO； UniProt 1–206 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
4V3P The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes Deposited 2014-10-20 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 1863 PDB declaration: 2001-meric
Chain LK 1–206（206 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 25MM HEPES-KOH, 3MM MG(OAC)2, 85MM KOAC,1.6MM DTT, 0.25MM SPERMIDINE；pH 7.6；25MM HEPES-KOH, 3MM MG(OAC)2, 85MM KOAC,1.6MM DTT, 0.25MM SPERMIDINE
cryo-EM vitrification conditions Cryogen ETHANE；VITRIFICATION 1 --CRYOGEN- ETHANE, HUMIDITY-95, TEMPERATURE- 120,INSTRUMENT- FEI VITROBOT MARK IV, METHOD- 3UL OF SAMPLE APPLIED ON 300 MESH HOLY CARBON QUANTIFOIL GRID. BLOTTING WAS DONE IN VITROBOT MARK IV, BLOT TIME 0.5 SEC, BLOT FORCE 5
Resolution 34.00 Å
4V7E Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome Deposited 2013-11-22 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 82 PDB declaration: 88-meric
Chain CO 1–206（206 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol；pH 7.5；20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol
cryo-EM vitrification conditions Blot for 10 seconds before plunging, use 2 layers of filter paper；Cryogen ETHANE；Blot for 10 seconds (using 2 layers of filter paper) before plunging into liquid ethane (FEI VITROBOT).
Resolution 5.50 Å
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain FB 1–206（206 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain FB 1–206（206 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain FB 1–206（206 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

5 other PDB entries and 5 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q5I7L1_WHEAT
Isoform —
PDB entities 17
Chains and sequence ranges Author chain CO； PDBConstruct 1–206； UniProt 1–206

60S ribosomal protein uL22

OrganismNot specified

UniProt W5FSM8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CP； UniProt 1–170 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain MA 1–170（170 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain MA 1–170（170 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain MA 1–170（170 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name W5FSM8_WHEAT
Isoform —
PDB entities 18
Chains and sequence ranges Author chain CP； PDBConstruct 1–170； UniProt 1–170

Ribosomal protein L18e/L15P domain-containing protein

OrganismNot specified

UniProt A0A3B5ZQE8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CQ； UniProt 1–188 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A3B5ZQE8_WHEAT
Isoform —
PDB entities 19
Chains and sequence ranges Author chain CQ； PDBConstruct 1–188； UniProt 1–188

Ribosomal protein L19

OrganismNot specified

UniProt A0A3B6C2W3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CR； UniProt 1–206 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A3B6C2W3_WHEAT
Isoform —
PDB entities 20
Chains and sequence ranges Author chain CR； PDBConstruct 1–206； UniProt 1–206

60S ribosomal protein L18a

OrganismNot specified

UniProt A0A3B5Z5M6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CS； UniProt 1–178 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A3B5Z5M6_WHEAT
Isoform —
PDB entities 21
Chains and sequence ranges Author chain CS； PDBConstruct 1–178； UniProt 1–178

60S ribosomal protein L21

OrganismNot specified

UniProt F4YWL9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CT； UniProt 1–164 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
4V7E Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome Deposited 2013-11-22 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 82 PDB declaration: 88-meric
Chain CT 1–164（164 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol；pH 7.5；20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol
cryo-EM vitrification conditions Blot for 10 seconds before plunging, use 2 layers of filter paper；Cryogen ETHANE；Blot for 10 seconds (using 2 layers of filter paper) before plunging into liquid ethane (FEI VITROBOT).
Resolution 5.50 Å
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain BA 1–164（164 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain BA 1–164（164 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain BA 1–164（164 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

4 other PDB entries and 4 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F4YWL9_WHEAT
Isoform —
PDB entities 22
Chains and sequence ranges Author chain CT； PDBConstruct 1–164； UniProt 1–164

Genome assembly, chromosome: II

OrganismNot specified

UniProt W5C5N9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CU； UniProt 1–129 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name W5C5N9_WHEAT
Isoform —
PDB entities 23
Chains and sequence ranges Author chain CU； PDBConstruct 1–129； UniProt 1–129

Ribosomal protein L17

OrganismNot specified

UniProt Q5I7K4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CV； UniProt 5–140 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
4V7E Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome Deposited 2013-11-22 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 82 PDB declaration: 88-meric
Chain CV 1–140（140 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol；pH 7.5；20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol
cryo-EM vitrification conditions Blot for 10 seconds before plunging, use 2 layers of filter paper；Cryogen ETHANE；Blot for 10 seconds (using 2 layers of filter paper) before plunging into liquid ethane (FEI VITROBOT).
Resolution 5.50 Å
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain GA 1–140（140 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain GA 1–140（140 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain GA 1–140（140 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

4 other PDB entries and 4 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q5I7K4_WHEAT
Isoform —
PDB entities 24
Chains and sequence ranges Author chain CV； PDBConstruct 1–136； UniProt 5–140

TRASH domain-containing protein

OrganismNot specified

UniProt A0A3B6ELC9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CW； UniProt 1–161 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A3B6ELC9_WHEAT
Isoform —
PDB entities 25
Chains and sequence ranges Author chain CW； PDBConstruct 1–161； UniProt 1–161

Genome assembly, chromosome: II

OrganismNot specified

UniProt A0A1D5UQZ5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CX； UniProt 1–152 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain NA 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain NA 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain NA 1–152（152 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A1D5UQZ5_WHEAT
Isoform —
PDB entities 26
Chains and sequence ranges Author chain CX； PDBConstruct 1–152； UniProt 1–152

KOW domain-containing protein

OrganismNot specified

UniProt A0A3B6GQI2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CY； UniProt 1–127 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain PA 1–157（157 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain PA 1–157（157 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain PA 1–157（157 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3B6GQI2_WHEAT
Isoform —
PDB entities 27
Chains and sequence ranges Author chain CY； PDBConstruct 1–127； UniProt 1–127

60S ribosomal protein L27

OrganismNot specified

UniProt A0A341XZK6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain CZ； UniProt 1–137 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain CA 1–137（137 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain CA 1–137（137 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain CA 1–137（137 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A341XZK6_WHEAT
Isoform —
PDB entities 28
Chains and sequence ranges Author chain CZ； PDBConstruct 1–137； UniProt 1–137

Ribosomal protein L18e/L15P domain-containing protein

OrganismNot specified

UniProt A0A3B6AUW8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Ca； UniProt 1–145 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A3B6AUW8_WHEAT
Isoform —
PDB entities 29
Chains and sequence ranges Author chain Ca； PDBConstruct 1–145； UniProt 1–145

60S ribosomal protein L29

OrganismNot specified

UniProt A0A1D5RRD3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Cb； UniProt 1–60 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain OB 1–60（60 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain OB 1–60（60 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain OB 1–60（60 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A1D5RRD3_WHEAT
Isoform —
PDB entities 30
Chains and sequence ranges Author chain Cb； PDBConstruct 1–60； UniProt 1–60

Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein

OrganismNot specified

UniProt W4ZRU3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Cc； UniProt 1–112 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain RA 1–112（112 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain RA 1–112（112 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain RA 1–112（112 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name W4ZRU3_WHEAT
Isoform —
PDB entities 31
Chains and sequence ranges Author chain Cc； PDBConstruct 1–112； UniProt 1–112

60S ribosomal protein L31

OrganismNot specified

UniProt W5G990

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Cd； UniProt 1–123 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain SA 1–123（123 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain SA 1–123（123 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain SA 1–123（123 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name W5G990_WHEAT
Isoform —
PDB entities 32
Chains and sequence ranges Author chain Cd； PDBConstruct 1–123； UniProt 1–123

60S ribosomal protein eL32

OrganismNot specified

UniProt A0A3B6SDD9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Ce； UniProt 1–133 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain TA 1–133（133 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain TA 1–133（133 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain TA 1–133（133 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3B6SDD9_WHEAT
Isoform —
PDB entities 33
Chains and sequence ranges Author chain Ce； PDBConstruct 1–133； UniProt 1–133

60S ribosomal protein L34

OrganismNot specified

UniProt A0A3B6RFY8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Cg； UniProt 1–119 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain PB 1–119（119 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain PB 1–119（119 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain PB 1–119（119 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3B6RFY8_WHEAT
Isoform —
PDB entities 35
Chains and sequence ranges Author chain Cg； PDBConstruct 1–119； UniProt 1–119

60S ribosomal protein L35

OrganismNot specified

UniProt Q8L805

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Ch； UniProt 1–124 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
2GO5 Structure of signal recognition particle receptor (SR) in complex with signal recognition particle (SRP) and ribosome nascent chain complex Deposited 2006-04-12 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 7 PDB declaration: nonameric
Chain 5 1–124（124 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 7.40 Å
2J37 MODEL OF MAMMALIAN SRP BOUND TO 80S RNCS Deposited 2006-08-18 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 6 PDB declaration: octameric
Chain 5 1–124（124 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 8.70 Å
4V3P The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes Deposited 2014-10-20 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 1863 PDB declaration: 2001-meric
Chain Lc 1–124（124 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 25MM HEPES-KOH, 3MM MG(OAC)2, 85MM KOAC,1.6MM DTT, 0.25MM SPERMIDINE；pH 7.6；25MM HEPES-KOH, 3MM MG(OAC)2, 85MM KOAC,1.6MM DTT, 0.25MM SPERMIDINE
cryo-EM vitrification conditions Cryogen ETHANE；VITRIFICATION 1 --CRYOGEN- ETHANE, HUMIDITY-95, TEMPERATURE- 120,INSTRUMENT- FEI VITROBOT MARK IV, METHOD- 3UL OF SAMPLE APPLIED ON 300 MESH HOLY CARBON QUANTIFOIL GRID. BLOTTING WAS DONE IN VITROBOT MARK IV, BLOT TIME 0.5 SEC, BLOT FORCE 5
Resolution 34.00 Å
4V7E Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome Deposited 2013-11-22 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 82 PDB declaration: 88-meric
Chain Ch 1–124（124 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol；pH 7.5；20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol
cryo-EM vitrification conditions Blot for 10 seconds before plunging, use 2 layers of filter paper；Cryogen ETHANE；Blot for 10 seconds (using 2 layers of filter paper) before plunging into liquid ethane (FEI VITROBOT).
Resolution 5.50 Å
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain BB 1–124（124 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain BB 1–124（124 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain BB 1–124（124 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

7 other PDB entries and 7 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name RL35_WHEAT
Isoform —
PDB entities 36
Chains and sequence ranges Author chain Ch； PDBConstruct 1–124； UniProt 1–124

60S ribosomal protein L36

OrganismNot specified

UniProt A0A1D5S805

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Ci； UniProt 1–111 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name A0A1D5S805_WHEAT
Isoform —
PDB entities 37
Chains and sequence ranges Author chain Ci； PDBConstruct 1–111； UniProt 1–111

Ribosomal protein L37

OrganismNot specified

UniProt A0A1D6BC85

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Cj； UniProt 1–93 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain UA 1–93（93 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain UA 1–93（93 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain UA 1–93（93 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A1D6BC85_WHEAT
Isoform —
PDB entities 38
Chains and sequence ranges Author chain Cj； PDBConstruct 1–93； UniProt 1–93

60S ribosomal protein L38

OrganismNot specified

UniProt A0A1D5W6Q2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Ck； UniProt 1–69 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain NB 1–69（69 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain NB 1–69（69 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain NB 1–69（69 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A1D5W6Q2_WHEAT
Isoform —
PDB entities 39
Chains and sequence ranges Author chain Ck； PDBConstruct 1–69； UniProt 1–69

Ribosomal protein L39

OrganismNot specified

UniProt Q5I7K7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Cl； UniProt 1–51 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
4V3P The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes Deposited 2014-10-20 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 1863 PDB declaration: 2001-meric
Chain Lo 1–51（51 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 25MM HEPES-KOH, 3MM MG(OAC)2, 85MM KOAC,1.6MM DTT, 0.25MM SPERMIDINE；pH 7.6；25MM HEPES-KOH, 3MM MG(OAC)2, 85MM KOAC,1.6MM DTT, 0.25MM SPERMIDINE
cryo-EM vitrification conditions Cryogen ETHANE；VITRIFICATION 1 --CRYOGEN- ETHANE, HUMIDITY-95, TEMPERATURE- 120,INSTRUMENT- FEI VITROBOT MARK IV, METHOD- 3UL OF SAMPLE APPLIED ON 300 MESH HOLY CARBON QUANTIFOIL GRID. BLOTTING WAS DONE IN VITROBOT MARK IV, BLOT TIME 0.5 SEC, BLOT FORCE 5
Resolution 34.00 Å
4V7E Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome Deposited 2013-11-22 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 82 PDB declaration: 88-meric
Chain Cl 1–51（51 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol；pH 7.5；20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol
cryo-EM vitrification conditions Blot for 10 seconds before plunging, use 2 layers of filter paper；Cryogen ETHANE；Blot for 10 seconds (using 2 layers of filter paper) before plunging into liquid ethane (FEI VITROBOT).
Resolution 5.50 Å

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q5I7K7_WHEAT
Isoform —
PDB entities 40
Chains and sequence ranges Author chain Cl； PDBConstruct 1–51； UniProt 1–51

Ubiquitin-like domain-containing protein

OrganismNot specified

UniProt A0A1D5XNC2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Cm； UniProt 1–129 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain JB 1–129（129 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain JB 1–129（129 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain JB 1–129（129 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A1D5XNC2_WHEAT
Isoform —
PDB entities 41
Chains and sequence ranges Author chain Cm； PDBConstruct 1–129； UniProt 1–129

Genome assembly, chromosome: II

OrganismNot specified

UniProt W5HX73

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Co； UniProt 1–105 Non-standard monomer：Yes (specific site not provided by mmCIF) 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain WA 1–105（105 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain WA 1–105（105 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain WA 1–105（105 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name W5HX73_WHEAT
Isoform —
PDB entities 42
Chains and sequence ranges Author chain Co； PDBConstruct 1–105； UniProt 1–105

60S ribosomal protein L37a, expressed

OrganismNot specified

UniProt D8L9P6

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Cp； UniProt 1–92 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） Ribosomal L28e/Mak16 domain-containing protein × 1 （A0A3B5ZZN9） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
4V3P The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes Deposited 2014-10-20 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 1863 PDB declaration: 2001-meric
Chain Lm 1–92（92 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 25MM HEPES-KOH, 3MM MG(OAC)2, 85MM KOAC,1.6MM DTT, 0.25MM SPERMIDINE；pH 7.6；25MM HEPES-KOH, 3MM MG(OAC)2, 85MM KOAC,1.6MM DTT, 0.25MM SPERMIDINE
cryo-EM vitrification conditions Cryogen ETHANE；VITRIFICATION 1 --CRYOGEN- ETHANE, HUMIDITY-95, TEMPERATURE- 120,INSTRUMENT- FEI VITROBOT MARK IV, METHOD- 3UL OF SAMPLE APPLIED ON 300 MESH HOLY CARBON QUANTIFOIL GRID. BLOTTING WAS DONE IN VITROBOT MARK IV, BLOT TIME 0.5 SEC, BLOT FORCE 5
Resolution 34.00 Å
4V7E Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome Deposited 2013-11-22 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 82 PDB declaration: 88-meric
Chain Cp 1–92（92 aa）
Not recorded No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer 20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol；pH 7.5；20 mM HEPES/KOH, pH 7.5, 100 mM KOAc, 10 mM Mg(OAc)2, 0.01 mg/mL cycloheximide, 1 mM DTT, 0.01% Nikkol
cryo-EM vitrification conditions Blot for 10 seconds before plunging, use 2 layers of filter paper；Cryogen ETHANE；Blot for 10 seconds (using 2 layers of filter paper) before plunging into liquid ethane (FEI VITROBOT).
Resolution 5.50 Å
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain GB 1–92（92 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain GB 1–92（92 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain GB 1–92（92 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

5 other PDB entries and 5 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name D8L9P6_WHEAT
Isoform —
PDB entities 43
Chains and sequence ranges Author chain Cp； PDBConstruct 1–92； UniProt 1–92

Ribosomal L28e/Mak16 domain-containing protein

OrganismNot specified

UniProt A0A3B5ZZN9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein–RNA Heteromer Protein × 41 RNA 3 PDB declaration: 44-meric（44） Consistent with all polymer counts Chain Cr； UniProt 1–147 Not recorded 25S rRNA × 1 5S rRNA × 1 5.8S rRNA × 1 Ribosomal protein L2 C-terminal domain-containing protein × 1 （W5ECL2） Ribosomal protein L3 × 1 （Q7X744） 60S ribosomal protein L4 C-terminal domain-containing protein × 1 Ribosomal protein L5 eukaryotic C-terminal domain-containing protein × 1 （A0A3B6DD91） 60S ribosomal protein L6 × 1 （A0A3B6QGW3） 60S ribosomal protein uL30 × 1 （A0A3B6DM38） 60S ribosomal protein L7a × 1 （A0A3B6RED0） Ribosomal protein L6 alpha-beta domain-containing protein × 1 （A0A077RTE5） Ribosomal protein L10e/L16 domain-containing protein × 1 （A0A3B6HUM3） 60S ribosomal protein L11 × 1 （A0A3B5XX39） 60S ribosomal protein L13 × 1 （A0A3B6QBU0） Ribosomal protein L14e domain-containing protein × 1 （A0A3B6DGT8） Ribosomal protein L15 × 1 （W5FEX7） Ribosomal protein L13a × 1 （Q5I7L1） 60S ribosomal protein uL22 × 1 （W5FSM8） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B5ZQE8） Ribosomal protein L19 × 1 （A0A3B6C2W3） 60S ribosomal protein L18a × 1 （A0A3B5Z5M6） 60S ribosomal protein L21 × 1 （F4YWL9） Genome assembly, chromosome: II × 1 （W5C5N9） Ribosomal protein L17 × 1 （Q5I7K4） TRASH domain-containing protein × 1 （A0A3B6ELC9） Genome assembly, chromosome: II × 1 （A0A1D5UQZ5） KOW domain-containing protein × 1 （A0A3B6GQI2） 60S ribosomal protein L27 × 1 （A0A341XZK6） Ribosomal protein L18e/L15P domain-containing protein × 1 （A0A3B6AUW8） 60S ribosomal protein L29 × 1 （A0A1D5RRD3） Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein × 1 （W4ZRU3） 60S ribosomal protein L31 × 1 （W5G990） 60S ribosomal protein eL32 × 1 （A0A3B6SDD9） 60S ribosomal protein eL33 × 1 60S ribosomal protein L34 × 1 （A0A3B6RFY8） 60S ribosomal protein L35 × 1 （Q8L805） 60S ribosomal protein L36 × 1 （A0A1D5S805） Ribosomal protein L37 × 1 （A0A1D6BC85） 60S ribosomal protein L38 × 1 （A0A1D5W6Q2） Ribosomal protein L39 × 1 （Q5I7K7） Ubiquitin-like domain-containing protein × 1 （A0A1D5XNC2） Genome assembly, chromosome: II × 1 （W5HX73） 60S ribosomal protein L37a, expressed × 1 （D8L9P6） K POTASSIUM ION × 72 MG MAGNESIUM ION × 242 ZN ZINC ION × 3 ELECTRON MICROSCOPY cryo-EM buffer：pH 7.6 cryo-EM vitrification conditions：Cryogen ETHANE Resolution 2.84 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB Difference from Current Entry 8JIV Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Method and Experimental Conditions Structure Quality
8IP8 Wheat 80S ribosome stalled on AUG-Stop boron dependently Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 81-meric
Chain QA 1–147（147 aa）
Not recorded MG MAGNESIUM ION × 307 ZN ZINC ION × 4 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 2.90 Å
8IPA Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 74 PDB declaration: 80-meric
Chain QA 1–147（147 aa）
Not recorded MG MAGNESIUM ION × 284 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å
8IPB Wheat 80S ribosome pausing on AUG-Stop with cycloheximide Deposited 2023-03-14 Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics Assembly 1 Protein–RNA Heteromer；Protein × 73 PDB declaration: 79-meric
Chain QA 1–147（147 aa）
Not recorded MG MAGNESIUM ION × 265 ZN ZINC ION × 4 3HE 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione × 1 ELECTRON MICROSCOPY
cryo-EM buffer pH 7
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.40 Å

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name A0A3B5ZZN9_WHEAT
Isoform —
PDB entities 44
Chains and sequence ranges Author chain Cr； PDBConstruct 1–147； UniProt 1–147

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8jiv

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8jiv
Download Download
▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id8jiv
Deposition date deposition_date2023-05-28
Structure title titleAtomic structure of wheat ribosome reveals unique features of the plant ribosomes
Keywords keywordsProtein Synthesis Machinery, Eukaryotic Ribosome, Plant, TRANSLATION, RIBOSOME; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
▼

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier73.48 Å
Radius of gyration Rg (electron density) rg_electron74.90 Å
Forward intensity I(0) i085612300000.00
Molecular weight molecular_weight1726600.0 kDa
Excluded volume excluded_volume1842900 ų
Envelope volume envelope_volume2862100 ų
Hydration-shell volume shell_volume288480 ų
Envelope diameter envelope_diameter245.6 Å
Shell Rg shell_rg88.87 Å
Envelope Rg envelope_rg75.00 Å
Shape Rg shape_rg75.01 Å
Total Rg total_rg74.76 Å
Total atoms total_atoms116711
Residues n_residues9203
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 Å−1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3
▼

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax273.5 Å
Rg (real space) rg_real76.52 Å
Rg uncertainty (real space) rg_real_error1.48 Å
I(0) (real space) i0_real8.5610e+10
I(0) uncertainty (real space) i0_real_error1.8610e+09
Rg (reciprocal space) rg_reciprocal74.24 Å
I(0) (reciprocal space) i0_reciprocal85780000000.0000
Solution quality estimate total_estimate0.6572
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary91.2 Å
Skewness Skewness skewness0.528
Kurtosis Kurtosis kurtosis0.357
Angular range angular_range— – 0.1050 Å−1
Current regularization parameter α current_alpha0.9568
Highest regularization parameter α highest_alpha12870000000.0000
Real-space data points n_real_points22
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.657; Stabil: 0.893; Sysdev: 0.020; Positv: 1.000; Valcen: 0.948; Smooth: 0.904
▶

5. Crystallography and Experiment 5. Crystallography & Experiment

▶

6. Entities and Polymers Entities & Polymers (47)

▶

8. Citations (2)

▶

9. Files and Curves (10)