8khf

Structure of the human ATP synthase bound to bedaquiline (membrane domain)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

ATP synthase F(0) complex subunit C1, mitochondrial

OrganismNot specified

UniProt P05496

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 ATP synthase subunit gamma, mitochondrial × 1 (P36542) ATP synthase subunit delta, mitochondrial × 1 (P30049) ATP synthase subunit epsilon, mitochondrial × 1 (P56381) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P24539) ATP synthase subunit d, mitochondrial × 1 (O75947) ATP synthase subunit a × 1 (P00846) ATP synthase subunit ATP5MJ, mitochondrial × 1 (P56378) ATP synthase protein 8 × 1 (P03928) ATP synthase subunit f, mitochondrial × 1 (P56134) ATP synthase subunit g, mitochondrial × 1 (O75964) ATP synthase subunit e, mitochondrial × 1 (P56385) Bedaquiline × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name AT5G1_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 1; PDBConstruct 1–75; UniProt 62–136 Author chain 2; PDBConstruct 1–75; UniProt 62–136 Author chain 3; PDBConstruct 1–75; UniProt 62–136 Author chain 4; PDBConstruct 1–75; UniProt 62–136 Author chain 5; PDBConstruct 1–75; UniProt 62–136 Author chain 6; PDBConstruct 1–75; UniProt 62–136 Author chain 7; PDBConstruct 1–75; UniProt 62–136 Author chain 8; PDBConstruct 1–75; UniProt 62–136

ATP synthase subunit gamma, mitochondrial

OrganismNot specified

UniProt P36542

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 ATP synthase F(0) complex subunit C1, mitochondrial × 8 (P05496) ATP synthase subunit delta, mitochondrial × 1 (P30049) ATP synthase subunit epsilon, mitochondrial × 1 (P56381) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P24539) ATP synthase subunit d, mitochondrial × 1 (O75947) ATP synthase subunit a × 1 (P00846) ATP synthase subunit ATP5MJ, mitochondrial × 1 (P56378) ATP synthase protein 8 × 1 (P03928) ATP synthase subunit f, mitochondrial × 1 (P56134) ATP synthase subunit g, mitochondrial × 1 (O75964) ATP synthase subunit e, mitochondrial × 1 (P56385) Bedaquiline × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPG_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain G; PDBConstruct 1–273; UniProt 26–298

ATP synthase subunit delta, mitochondrial

OrganismNot specified

UniProt P30049

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 ATP synthase F(0) complex subunit C1, mitochondrial × 8 (P05496) ATP synthase subunit gamma, mitochondrial × 1 (P36542) ATP synthase subunit epsilon, mitochondrial × 1 (P56381) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P24539) ATP synthase subunit d, mitochondrial × 1 (O75947) ATP synthase subunit a × 1 (P00846) ATP synthase subunit ATP5MJ, mitochondrial × 1 (P56378) ATP synthase protein 8 × 1 (P03928) ATP synthase subunit f, mitochondrial × 1 (P56134) ATP synthase subunit g, mitochondrial × 1 (O75964) ATP synthase subunit e, mitochondrial × 1 (P56385) Bedaquiline × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPD_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain H; PDBConstruct 1–146; UniProt 23–168

ATP synthase subunit epsilon, mitochondrial

OrganismNot specified

UniProt P56381

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 ATP synthase F(0) complex subunit C1, mitochondrial × 8 (P05496) ATP synthase subunit gamma, mitochondrial × 1 (P36542) ATP synthase subunit delta, mitochondrial × 1 (P30049) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P24539) ATP synthase subunit d, mitochondrial × 1 (O75947) ATP synthase subunit a × 1 (P00846) ATP synthase subunit ATP5MJ, mitochondrial × 1 (P56378) ATP synthase protein 8 × 1 (P03928) ATP synthase subunit f, mitochondrial × 1 (P56134) ATP synthase subunit g, mitochondrial × 1 (O75964) ATP synthase subunit e, mitochondrial × 1 (P56385) Bedaquiline × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP5E_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain I; PDBConstruct 1–51; UniProt 1–51

ATP synthase F(0) complex subunit B1, mitochondrial

OrganismNot specified

UniProt P24539

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 ATP synthase F(0) complex subunit C1, mitochondrial × 8 (P05496) ATP synthase subunit gamma, mitochondrial × 1 (P36542) ATP synthase subunit delta, mitochondrial × 1 (P30049) ATP synthase subunit epsilon, mitochondrial × 1 (P56381) ATP synthase subunit d, mitochondrial × 1 (O75947) ATP synthase subunit a × 1 (P00846) ATP synthase subunit ATP5MJ, mitochondrial × 1 (P56378) ATP synthase protein 8 × 1 (P03928) ATP synthase subunit f, mitochondrial × 1 (P56134) ATP synthase subunit g, mitochondrial × 1 (O75964) ATP synthase subunit e, mitochondrial × 1 (P56385) Bedaquiline × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name AT5F1_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain K; PDBConstruct 1–214; UniProt 43–256

ATP synthase subunit d, mitochondrial

OrganismNot specified

UniProt O75947

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 ATP synthase F(0) complex subunit C1, mitochondrial × 8 (P05496) ATP synthase subunit gamma, mitochondrial × 1 (P36542) ATP synthase subunit delta, mitochondrial × 1 (P30049) ATP synthase subunit epsilon, mitochondrial × 1 (P56381) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P24539) ATP synthase subunit a × 1 (P00846) ATP synthase subunit ATP5MJ, mitochondrial × 1 (P56378) ATP synthase protein 8 × 1 (P03928) ATP synthase subunit f, mitochondrial × 1 (P56134) ATP synthase subunit g, mitochondrial × 1 (O75964) ATP synthase subunit e, mitochondrial × 1 (P56385) Bedaquiline × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP5H_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain M; PDBConstruct 1–160; UniProt 2–161

ATP synthase subunit a

OrganismNot specified

UniProt P00846

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 ATP synthase F(0) complex subunit C1, mitochondrial × 8 (P05496) ATP synthase subunit gamma, mitochondrial × 1 (P36542) ATP synthase subunit delta, mitochondrial × 1 (P30049) ATP synthase subunit epsilon, mitochondrial × 1 (P56381) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P24539) ATP synthase subunit d, mitochondrial × 1 (O75947) ATP synthase subunit ATP5MJ, mitochondrial × 1 (P56378) ATP synthase protein 8 × 1 (P03928) ATP synthase subunit f, mitochondrial × 1 (P56134) ATP synthase subunit g, mitochondrial × 1 (O75964) ATP synthase subunit e, mitochondrial × 1 (P56385) Bedaquiline × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP6_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain N; PDBConstruct 1–226; UniProt 1–226

ATP synthase subunit ATP5MJ, mitochondrial

OrganismNot specified

UniProt P56378

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 ATP synthase F(0) complex subunit C1, mitochondrial × 8 (P05496) ATP synthase subunit gamma, mitochondrial × 1 (P36542) ATP synthase subunit delta, mitochondrial × 1 (P30049) ATP synthase subunit epsilon, mitochondrial × 1 (P56381) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P24539) ATP synthase subunit d, mitochondrial × 1 (O75947) ATP synthase subunit a × 1 (P00846) ATP synthase protein 8 × 1 (P03928) ATP synthase subunit f, mitochondrial × 1 (P56134) ATP synthase subunit g, mitochondrial × 1 (O75964) ATP synthase subunit e, mitochondrial × 1 (P56385) Bedaquiline × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP68_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain P; PDBConstruct 1–58; UniProt 1–58

ATP synthase protein 8

OrganismNot specified

UniProt P03928

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 ATP synthase F(0) complex subunit C1, mitochondrial × 8 (P05496) ATP synthase subunit gamma, mitochondrial × 1 (P36542) ATP synthase subunit delta, mitochondrial × 1 (P30049) ATP synthase subunit epsilon, mitochondrial × 1 (P56381) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P24539) ATP synthase subunit d, mitochondrial × 1 (O75947) ATP synthase subunit a × 1 (P00846) ATP synthase subunit ATP5MJ, mitochondrial × 1 (P56378) ATP synthase subunit f, mitochondrial × 1 (P56134) ATP synthase subunit g, mitochondrial × 1 (O75964) ATP synthase subunit e, mitochondrial × 1 (P56385) Bedaquiline × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP8_HUMAN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain Q; PDBConstruct 1–68; UniProt 1–68

ATP synthase subunit f, mitochondrial

OrganismNot specified

UniProt P56134

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 ATP synthase F(0) complex subunit C1, mitochondrial × 8 (P05496) ATP synthase subunit gamma, mitochondrial × 1 (P36542) ATP synthase subunit delta, mitochondrial × 1 (P30049) ATP synthase subunit epsilon, mitochondrial × 1 (P56381) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P24539) ATP synthase subunit d, mitochondrial × 1 (O75947) ATP synthase subunit a × 1 (P00846) ATP synthase subunit ATP5MJ, mitochondrial × 1 (P56378) ATP synthase protein 8 × 1 (P03928) ATP synthase subunit g, mitochondrial × 1 (O75964) ATP synthase subunit e, mitochondrial × 1 (P56385) Bedaquiline × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATPK_HUMAN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain R; PDBConstruct 1–93; UniProt 2–94

ATP synthase subunit g, mitochondrial

OrganismNot specified

UniProt O75964

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 ATP synthase F(0) complex subunit C1, mitochondrial × 8 (P05496) ATP synthase subunit gamma, mitochondrial × 1 (P36542) ATP synthase subunit delta, mitochondrial × 1 (P30049) ATP synthase subunit epsilon, mitochondrial × 1 (P56381) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P24539) ATP synthase subunit d, mitochondrial × 1 (O75947) ATP synthase subunit a × 1 (P00846) ATP synthase subunit ATP5MJ, mitochondrial × 1 (P56378) ATP synthase protein 8 × 1 (P03928) ATP synthase subunit f, mitochondrial × 1 (P56134) ATP synthase subunit e, mitochondrial × 1 (P56385) Bedaquiline × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP5L_HUMAN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain S; PDBConstruct 1–102; UniProt 2–103

ATP synthase subunit e, mitochondrial

OrganismNot specified

UniProt P56385

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 19 ATP synthase F(0) complex subunit C1, mitochondrial × 8 (P05496) ATP synthase subunit gamma, mitochondrial × 1 (P36542) ATP synthase subunit delta, mitochondrial × 1 (P30049) ATP synthase subunit epsilon, mitochondrial × 1 (P56381) ATP synthase F(0) complex subunit B1, mitochondrial × 1 (P24539) ATP synthase subunit d, mitochondrial × 1 (O75947) ATP synthase subunit a × 1 (P00846) ATP synthase subunit ATP5MJ, mitochondrial × 1 (P56378) ATP synthase protein 8 × 1 (P03928) ATP synthase subunit f, mitochondrial × 1 (P56134) ATP synthase subunit g, mitochondrial × 1 (O75964) Bedaquiline × 1 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ATP5I_HUMAN
Isoform —
PDB entities 12
Chains and sequence ranges Author chain T; PDBConstruct 1–69; UniProt 1–69

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8khf
Deposition date deposition_date2023-08-21
Structure title titleStructure of the human ATP synthase bound to bedaquiline (membrane domain)
Keywords keywordsATP synthase, Human, cryo-EM, Membrane protein; MEMBRANE PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8khf__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8khf__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8khf__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)39.58 Å
Rg (electron density)39.04 Å
Total Rg39.42 Å
Atom count12120
Residues1596
Excluded volume221560 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8khf__assembly_1__model_1 nonadecameric (19) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (13)

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7. Citations (1)