9eug

Cryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the pre-contraction state - core, wedge module, and proximal tail proteins

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

NlpC/P60 domain-containing protein

OrganismNot specified

UniProt A0A0U1UXW0

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 135 GP-PDE domain-containing protein × 5 (A0A0U1WFD7) Baseplate component × 20 (A0A0U1WF63) Peptidase C51 domain-containing protein × 5 (A0A0U1X189) Baseplate component × 10 (A0A0U1UXD6) TmpF × 10 (A0A0U1WGD3) Baseplate wedge subunit × 10 (A0A0U1UXD7) Putative baseplate component × 10 (A0A0U1X2L4) Major tail sheath protein × 30 (A0A0U1WZ79) Capsid protein × 30 (A1YTP2) Review required

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0U1UXW0_9CAUD
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–295; UniProt 1–295

GP-PDE domain-containing protein

OrganismNot specified

UniProt A0A0U1WFD7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 135 NlpC/P60 domain-containing protein × 5 (A0A0U1UXW0) Baseplate component × 20 (A0A0U1WF63) Peptidase C51 domain-containing protein × 5 (A0A0U1X189) Baseplate component × 10 (A0A0U1UXD6) TmpF × 10 (A0A0U1WGD3) Baseplate wedge subunit × 10 (A0A0U1UXD7) Putative baseplate component × 10 (A0A0U1X2L4) Major tail sheath protein × 30 (A0A0U1WZ79) Capsid protein × 30 (A1YTP2) Review required

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0U1WFD7_9CAUD
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–848; UniProt 1–848

Baseplate component

OrganismNot specified

UniProt A0A0U1WF63

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 135 NlpC/P60 domain-containing protein × 5 (A0A0U1UXW0) GP-PDE domain-containing protein × 5 (A0A0U1WFD7) Peptidase C51 domain-containing protein × 5 (A0A0U1X189) Baseplate component × 10 (A0A0U1UXD6) TmpF × 10 (A0A0U1WGD3) Baseplate wedge subunit × 10 (A0A0U1UXD7) Putative baseplate component × 10 (A0A0U1X2L4) Major tail sheath protein × 30 (A0A0U1WZ79) Capsid protein × 30 (A1YTP2) Review required

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0U1WF63_9CAUD
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–348; UniProt 1–348 Author chain D; PDBConstruct 1–348; UniProt 1–348 Author chain I; PDBConstruct 1–348; UniProt 1–348 Author chain K; PDBConstruct 1–348; UniProt 1–348

Peptidase C51 domain-containing protein

OrganismNot specified

UniProt A0A0U1X189

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 135 NlpC/P60 domain-containing protein × 5 (A0A0U1UXW0) GP-PDE domain-containing protein × 5 (A0A0U1WFD7) Baseplate component × 20 (A0A0U1WF63) Baseplate component × 10 (A0A0U1UXD6) TmpF × 10 (A0A0U1WGD3) Baseplate wedge subunit × 10 (A0A0U1UXD7) Putative baseplate component × 10 (A0A0U1X2L4) Major tail sheath protein × 30 (A0A0U1WZ79) Capsid protein × 30 (A1YTP2) Review required

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0U1X189_9CAUD
Isoform —
PDB entities 4
Chains and sequence ranges Author chain E; PDBConstruct 1–808; UniProt 1–808

Baseplate component

OrganismNot specified

UniProt A0A0U1UXD6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 135 NlpC/P60 domain-containing protein × 5 (A0A0U1UXW0) GP-PDE domain-containing protein × 5 (A0A0U1WFD7) Baseplate component × 20 (A0A0U1WF63) Peptidase C51 domain-containing protein × 5 (A0A0U1X189) TmpF × 10 (A0A0U1WGD3) Baseplate wedge subunit × 10 (A0A0U1UXD7) Putative baseplate component × 10 (A0A0U1X2L4) Major tail sheath protein × 30 (A0A0U1WZ79) Capsid protein × 30 (A1YTP2) Review required

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0U1UXD6_9CAUD
Isoform —
PDB entities 5
Chains and sequence ranges Author chain F; PDBConstruct 1–174; UniProt 1–174 Author chain G; PDBConstruct 1–174; UniProt 1–174

TmpF

OrganismNot specified

UniProt A0A0U1WGD3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 135 NlpC/P60 domain-containing protein × 5 (A0A0U1UXW0) GP-PDE domain-containing protein × 5 (A0A0U1WFD7) Baseplate component × 20 (A0A0U1WF63) Peptidase C51 domain-containing protein × 5 (A0A0U1X189) Baseplate component × 10 (A0A0U1UXD6) Baseplate wedge subunit × 10 (A0A0U1UXD7) Putative baseplate component × 10 (A0A0U1X2L4) Major tail sheath protein × 30 (A0A0U1WZ79) Capsid protein × 30 (A1YTP2) Review required

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0U1WGD3_9CAUD
Isoform —
PDB entities 6
Chains and sequence ranges Author chain H; PDBConstruct 1–1019; UniProt 1–1019 Author chain J; PDBConstruct 1–1019; UniProt 1–1019

Baseplate wedge subunit

OrganismNot specified

UniProt A0A0U1UXD7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 135 NlpC/P60 domain-containing protein × 5 (A0A0U1UXW0) GP-PDE domain-containing protein × 5 (A0A0U1WFD7) Baseplate component × 20 (A0A0U1WF63) Peptidase C51 domain-containing protein × 5 (A0A0U1X189) Baseplate component × 10 (A0A0U1UXD6) TmpF × 10 (A0A0U1WGD3) Putative baseplate component × 10 (A0A0U1X2L4) Major tail sheath protein × 30 (A0A0U1WZ79) Capsid protein × 30 (A1YTP2) Review required

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0U1UXD7_9CAUD
Isoform —
PDB entities 7
Chains and sequence ranges Author chain L; PDBConstruct 1–234; UniProt 1–234 Author chain O; PDBConstruct 1–234; UniProt 1–234

Putative baseplate component

OrganismNot specified

UniProt A0A0U1X2L4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 135 NlpC/P60 domain-containing protein × 5 (A0A0U1UXW0) GP-PDE domain-containing protein × 5 (A0A0U1WFD7) Baseplate component × 20 (A0A0U1WF63) Peptidase C51 domain-containing protein × 5 (A0A0U1X189) Baseplate component × 10 (A0A0U1UXD6) TmpF × 10 (A0A0U1WGD3) Baseplate wedge subunit × 10 (A0A0U1UXD7) Major tail sheath protein × 30 (A0A0U1WZ79) Capsid protein × 30 (A1YTP2) Review required

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0U1X2L4_9CAUD
Isoform —
PDB entities 8
Chains and sequence ranges Author chain M; PDBConstruct 1–263; UniProt 1–263 Author chain N; PDBConstruct 1–263; UniProt 1–263

Major tail sheath protein

OrganismNot specified

UniProt A0A0U1WZ79

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 135 NlpC/P60 domain-containing protein × 5 (A0A0U1UXW0) GP-PDE domain-containing protein × 5 (A0A0U1WFD7) Baseplate component × 20 (A0A0U1WF63) Peptidase C51 domain-containing protein × 5 (A0A0U1X189) Baseplate component × 10 (A0A0U1UXD6) TmpF × 10 (A0A0U1WGD3) Baseplate wedge subunit × 10 (A0A0U1UXD7) Putative baseplate component × 10 (A0A0U1X2L4) Capsid protein × 30 (A1YTP2) Review required

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A0U1WZ79_9CAUD
Isoform —
PDB entities 9
Chains and sequence ranges Author chain P; PDBConstruct 1–587; UniProt 1–587 Author chain Q; PDBConstruct 1–587; UniProt 1–587 Author chain T; PDBConstruct 1–587; UniProt 1–587 Author chain U; PDBConstruct 1–587; UniProt 1–587 Author chain X; PDBConstruct 1–587; UniProt 1–587 Author chain Y; PDBConstruct 1–587; UniProt 1–587

Capsid protein

OrganismNot specified

UniProt A1YTP2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 135 NlpC/P60 domain-containing protein × 5 (A0A0U1UXW0) GP-PDE domain-containing protein × 5 (A0A0U1WFD7) Baseplate component × 20 (A0A0U1WF63) Peptidase C51 domain-containing protein × 5 (A0A0U1X189) Baseplate component × 10 (A0A0U1UXD6) TmpF × 10 (A0A0U1WGD3) Baseplate wedge subunit × 10 (A0A0U1UXD7) Putative baseplate component × 10 (A0A0U1X2L4) Major tail sheath protein × 30 (A0A0U1WZ79) Review required

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A1YTP2_9CAUD
Isoform —
PDB entities 10
Chains and sequence ranges Author chain R; PDBConstruct 1–142; UniProt 1–142 Author chain S; PDBConstruct 1–142; UniProt 1–142 Author chain V; PDBConstruct 1–142; UniProt 1–142 Author chain W; PDBConstruct 1–142; UniProt 1–142 Author chain Z; PDBConstruct 1–142; UniProt 1–142 Author chain a; PDBConstruct 1–142; UniProt 1–142

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id9eug
Deposition date deposition_date2024-03-27
Structure title titleCryo-EM structure of Staphylococcus aureus bacteriophage phi812 baseplate in the pre-contraction state - core, wedge module, and proximal tail proteins
Keywords keywordsbacteriophage, phage, contractile, phi812, baseplate, VIRUS; VIRUS
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9eug__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9eug__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9eug__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)93.12 Å
Rg (electron density)92.51 Å
Total Rg92.62 Å
Atom count187569
Residues23700
Excluded volume3330500 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9eug__assembly_1__model_1 81-meric (81) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (10)

▶

7. Citations (1)