|
1C9B
CRYSTAL STRUCTURE OF A HUMAN TBP CORE DOMAIN-HUMAN TFIIB CORE DOMAIN COMPLEX BOUND TO AN EXTENDED, MODIFIED ADENOVIRAL MAJOR LATE PROMOTER (ADMLP)
Deposited 1999-08-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
158–337(180 aa)
Fragment:C-TERMINAL CORE DOMAIN
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;PEG 8000, TRIS.HCL, AMMONIUM ACETATE, MAGNESIUM CHLORIDE, POTASSIUM CHLORIDE, SODIUM CITRATE, DTT, GLYCEROL, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.65 Å
R-free 0.260
|
|
1C9B
CRYSTAL STRUCTURE OF A HUMAN TBP CORE DOMAIN-HUMAN TFIIB CORE DOMAIN COMPLEX BOUND TO AN EXTENDED, MODIFIED ADENOVIRAL MAJOR LATE PROMOTER (ADMLP)
Deposited 1999-08-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain F
158–337(180 aa)
Fragment:C-TERMINAL CORE DOMAIN
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;PEG 8000, TRIS.HCL, AMMONIUM ACETATE, MAGNESIUM CHLORIDE, POTASSIUM CHLORIDE, SODIUM CITRATE, DTT, GLYCEROL, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.65 Å
R-free 0.260
|
|
1C9B
CRYSTAL STRUCTURE OF A HUMAN TBP CORE DOMAIN-HUMAN TFIIB CORE DOMAIN COMPLEX BOUND TO AN EXTENDED, MODIFIED ADENOVIRAL MAJOR LATE PROMOTER (ADMLP)
Deposited 1999-08-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 3
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain J
158–337(180 aa)
Fragment:C-TERMINAL CORE DOMAIN
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;PEG 8000, TRIS.HCL, AMMONIUM ACETATE, MAGNESIUM CHLORIDE, POTASSIUM CHLORIDE, SODIUM CITRATE, DTT, GLYCEROL, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.65 Å
R-free 0.260
|
|
1C9B
CRYSTAL STRUCTURE OF A HUMAN TBP CORE DOMAIN-HUMAN TFIIB CORE DOMAIN COMPLEX BOUND TO AN EXTENDED, MODIFIED ADENOVIRAL MAJOR LATE PROMOTER (ADMLP)
Deposited 1999-08-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 4
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain N
158–337(180 aa)
Fragment:C-TERMINAL CORE DOMAIN
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;PEG 8000, TRIS.HCL, AMMONIUM ACETATE, MAGNESIUM CHLORIDE, POTASSIUM CHLORIDE, SODIUM CITRATE, DTT, GLYCEROL, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.65 Å
R-free 0.260
|
|
1C9B
CRYSTAL STRUCTURE OF A HUMAN TBP CORE DOMAIN-HUMAN TFIIB CORE DOMAIN COMPLEX BOUND TO AN EXTENDED, MODIFIED ADENOVIRAL MAJOR LATE PROMOTER (ADMLP)
Deposited 1999-08-01
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 5
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain R
158–337(180 aa)
Fragment:C-TERMINAL CORE DOMAIN
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;277 K;PEG 8000, TRIS.HCL, AMMONIUM ACETATE, MAGNESIUM CHLORIDE, POTASSIUM CHLORIDE, SODIUM CITRATE, DTT, GLYCEROL, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
|
Resolution 2.65 Å
R-free 0.260
|
|
1CDW
HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA
Deposited 1996-04-11
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Monomer;Protein × 1
PDB declaration: trimeric
|
Chain A
159–337(179 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
mmCIF provides none of the parsed conditions
|
Resolution 1.90 Å
R-free 0.258
|
|
1JFI
Crystal Structure of the NC2-TBP-DNA Ternary Complex
Deposited 2001-06-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 3
PDB declaration: pentameric
|
Chain C
159–339(181 aa)
Fragment:RESIDUES 359-539
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;293 K;PEG 4000, sodium citrate, potassium chloride, magnesium chloride, DTT, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.62 Å
R-free 0.277
|
|
1NVP
HUMAN TFIIA/TBP/DNA COMPLEX
Deposited 2003-02-04
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 4
PDB declaration: hexameric
|
Chain A
159–339(181 aa)
Fragment:C-TERMINAL 181 AMINO ACIDS
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.5;295 K;PEG6000, lithium nitrate, calcium chloride, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
|
Resolution 2.10 Å
R-free 0.247
|
|
1TGH
TATA BINDING PROTEIN (TBP)/DNA COMPLEX
Deposited 1996-02-13
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Monomer;Protein × 1
PDB declaration: trimeric
|
Chain A
113–297(185 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 8;pH 8.00
|
Resolution 2.90 Å
R-free 0.294
|
|
4ROC
Human TFIIB-related factor 2 (Brf2) and TBP bound to U6#2 promoter
Deposited 2014-10-28
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
159–339(181 aa)
|
Not recorded
|
MG MAGNESIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.9;293 K;10-20% PEG 3350, 50-100 mM MgCl2, 2 mM DTT, pH 7.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 1.90 Å
R-free 0.215
|
|
4ROD
Human TFIIB-related factor 2 (Brf2) and TBP bound to TRNAU1 promoter
Deposited 2014-10-28
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
159–339(181 aa)
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.9;293 K;10-20% PEG 3350, 50-100 mM MgCl2, 2 mM DTT, pH 7.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.70 Å
R-free 0.247
|
|
4ROE
Human TFIIB-related factor 2 (Brf2) and TBP bound to RPPH1 promoter
Deposited 2014-10-28
|
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
159–339(181 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.9;293 K;10-20% PEG 3350, 50-100 mM MgCl2, 2 mM DTT, pH 7.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.20 Å
R-free 0.222
|
|
5FUR
Structure of human TFIID-IIA bound to core promoter DNA
Deposited 2016-01-29
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 10
PDB declaration: dodecameric
|
Chain A
1–339(339 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
10 MM HEPES, 10 MM MGCL2, 50 MM KCL, 3% TREHALOSE 1 MM DTT, 0.0125% NP-40;pH 7.9;10 MM HEPES, 10 MM MGCL2, 50 MM KCL, 3% TREHALOSE 1 MM DTT, 0.0125% NP-40
cryo-EM vitrification conditions
Cryogen ETHANE;LIQUID ETHANE
|
Resolution 8.50 Å
|
|
5IY6
Human holo-PIC in the closed state
Deposited 2016-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 27
PDB declaration: 29-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
ZN ZINC ION × 11
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE;Blot for 4 seconds before plunging into liquid ethane (FEI VITROBOT MARK IV).
|
Resolution 7.20 Å
|
|
5IY7
Human holo-PIC in the open state
Deposited 2016-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 27
PDB declaration: 29-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
ZN ZINC ION × 11
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE;Blot for 4 seconds before plunging into liquid ethane (FEI VITROBOT MARK IV).
|
Resolution 8.60 Å
|
|
5IY8
Human holo-PIC in the initial transcribing state
Deposited 2016-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 27
PDB declaration: 29-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
ZN ZINC ION × 11
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE;Blot for 4 seconds before plunging into liquid ethane (FEI VITROBOT MARK IV).
|
Resolution 7.90 Å
|
|
5IY9
Human holo-PIC in the initial transcribing state (no IIS)
Deposited 2016-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 26
PDB declaration: 29-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
ZN ZINC ION × 10
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE;Blot for 4 seconds before plunging into liquid ethane (FEI VITROBOT MARK IV).
|
Resolution 6.30 Å
|
|
5IYA
Human core-PIC in the closed state
Deposited 2016-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 21
PDB declaration: 23-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
ZN ZINC ION × 11
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE;Blot for 4 seconds before plunging into liquid ethane (FEI VITROBOT MARK IV).
|
Resolution 5.40 Å
|
|
5IYB
Human core-PIC in the open state
Deposited 2016-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 21
PDB declaration: 23-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
ZN ZINC ION × 11
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE;Blot for 4 seconds before plunging into liquid ethane (FEI VITROBOT MARK IV).
|
Resolution 3.90 Å
|
|
5IYC
Human core-PIC in the initial transcribing state
Deposited 2016-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 21
PDB declaration: 23-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
ZN ZINC ION × 11
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE;Blot for 4 seconds before plunging into liquid ethane (FEI VITROBOT MARK IV).
|
Resolution 3.90 Å
|
|
5IYD
Human core-PIC in the initial transcribing state (no IIS)
Deposited 2016-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 20
PDB declaration: 23-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
ZN ZINC ION × 11
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE;Blot for 4 seconds before plunging into liquid ethane (FEI VITROBOT MARK IV).
|
Resolution 3.90 Å
|
|
5N9G
TFIIIB -TBP/Brf2/DNA and SANT domain of Bdp1-
Deposited 2017-02-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 3
PDB declaration: pentameric
|
Chain B
159–339(181 aa)
Fragment:UNP residues 159-339
|
Not recorded
|
No recorded non-water small molecule
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;10-16% PEG 8000,
150-200 mM KCl,
100 mM MES pH 6.5,
10-15 mM MgCl2,
1 mM TCEP
|
Resolution 2.70 Å
R-free 0.234
|
|
5N9G
TFIIIB -TBP/Brf2/DNA and SANT domain of Bdp1-
Deposited 2017-02-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental method
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein–DNA
Heteromer;Protein × 3
PDB declaration: pentameric
|
Chain G
159–339(181 aa)
Fragment:UNP residues 159-339
|
Not recorded
|
NA SODIUM ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;10-16% PEG 8000,
150-200 mM KCl,
100 mM MES pH 6.5,
10-15 mM MgCl2,
1 mM TCEP
|
Resolution 2.70 Å
R-free 0.234
|
|
6MZD
Human TFIID Lobe A canonical
Deposited 2018-11-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 12
PDB declaration: dodecameric
|
Chain T
1–339(339 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE;BT 4s; BF 15N
|
Resolution 9.80 Å
|
|
6MZL
Human TFIID canonical state
Deposited 2018-11-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 22
PDB declaration: 22-meric
|
Chain T
1–339(339 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE;BT 4s; BF 15N
|
Resolution 23.00 Å
|
|
6MZM
Human TFIID bound to promoter DNA and TFIIA
Deposited 2018-11-05
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 15
PDB declaration: heptadecameric
|
Chain T
1–339(339 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE;BT 4s; BF 15N
|
Resolution 7.50 Å
|
|
6O9L
Human holo-PIC in the closed state
Deposited 2019-03-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 31
PDB declaration: 33-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
ZN ZINC ION × 17
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 7.20 Å
|
|
7EDX
p53-bound TFIID-based core PIC on HDM2 promoter
Deposited 2021-03-17
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 37
PDB declaration: 39-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 9
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.50 Å
|
|
7EG7
TFIID-based core PIC on SCP promoter
Deposited 2021-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 37
PDB declaration: 39-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 9
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.20 Å
|
|
7EG8
TFIID-based core PIC on PUMA promoter
Deposited 2021-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 37
PDB declaration: 39-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 9
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 7.40 Å
|
|
7EG9
TFIID-based intermediate PIC on SCP promoter
Deposited 2021-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 39
PDB declaration: 41-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 10
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.70 Å
|
|
7EGA
TFIID-based intermediate PIC on PUMA promoter
Deposited 2021-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 39
PDB declaration: 41-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 10
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.10 Å
|
|
7EGB
TFIID-based holo PIC on SCP promoter
Deposited 2021-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 49
PDB declaration: 51-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 17
SF4 IRON/SULFUR CLUSTER × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å
|
|
7EGC
p53-bound TFIID-based holo PIC on HDM2 promoter
Deposited 2021-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 49
PDB declaration: 51-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 16
SF4 IRON/SULFUR CLUSTER × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.90 Å
|
|
7EGD
SCP promoter-bound TFIID-TFIIA in initial TBP-loading state
Deposited 2021-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 22
PDB declaration: 24-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.75 Å
|
|
7EGE
TFIID in canonical conformation
Deposited 2021-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 20
PDB declaration: eicosameric
|
Chain P
1–339(339 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 9.00 Å
|
|
7EGF
TFIID lobe A subcomplex
Deposited 2021-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 10
PDB declaration: decameric
|
Chain P
1–339(339 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.16 Å
|
|
7EGI
TFIID in rearranged conformation
Deposited 2021-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein heterocomplex
Heteromer;Protein × 22
PDB declaration: 22-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 9.82 Å
|
|
7EGJ
SCP promoter-bound TFIID-TFIIA in post TBP-loading state
Deposited 2021-03-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 22
PDB declaration: 24-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
No recorded non-water small molecule
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 8.64 Å
|
|
7ENA
TFIID-based PIC-Mediator holo-complex in pre-assembled state (pre-hPIC-MED)
Deposited 2021-04-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 74
PDB declaration: 76-meric
|
Chain DP
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 16
MG MAGNESIUM ION × 1
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.07 Å
|
|
7ENC
TFIID-based PIC-Mediator holo-complex in fully-assembled state (hPIC-MED)
Deposited 2021-04-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 74
PDB declaration: 76-meric
|
Chain DP
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 16
SF4 IRON/SULFUR CLUSTER × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.13 Å
|
|
7LBM
Structure of the human Mediator-bound transcription pre-initiation complex
Deposited 2021-01-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 54
PDB declaration: 56-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
MG MAGNESIUM ION × 2
ZN ZINC ION × 16
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.80 Å
|
|
7NVR
Human Mediator with RNA Polymerase II Pre-initiation complex
Deposited 2021-03-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 56
PDB declaration: 58-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
ZN ZINC ION × 18
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.50 Å
|
|
7NVS
RNA polymerase II core pre-initiation complex with closed promoter DNA in proximal position
Deposited 2021-03-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 20
PDB declaration: 22-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 10
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.80 Å
|
|
7NVT
RNA polymerase II core pre-initiation complex with closed promoter DNA in distal position
Deposited 2021-03-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 20
PDB declaration: 22-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 10
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
7NVU
RNA polymerase II core pre-initiation complex with open promoter DNA
Deposited 2021-03-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 20
PDB declaration: 22-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 10
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.50 Å
|
|
7NVY
RNA polymerase II pre-initiation complex with closed promoter DNA in proximal position
Deposited 2021-03-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 30
PDB declaration: 32-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
ZN ZINC ION × 17
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 7.30 Å
|
|
7NVZ
RNA polymerase II pre-initiation complex with closed promoter DNA in distal position
Deposited 2021-03-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 30
PDB declaration: 32-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
ZN ZINC ION × 17
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 7.20 Å
|
|
7NW0
RNA polymerase II pre-initiation complex with open promoter DNA
Deposited 2021-03-16
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 30
PDB declaration: 32-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
ZN ZINC ION × 15
ADP ADENOSINE-5'-DIPHOSPHATE × 1
MG MAGNESIUM ION × 2
BEF BERYLLIUM TRIFLUORIDE ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.60 Å
|
|
7ZWC
Structure of SNAPc:TBP-TFIIA-TFIIB sub-complex bound to U5 snRNA promoter
Deposited 2022-05-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 8
PDB declaration: decameric
|
Chain O
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.20 Å
|
|
7ZWD
Structure of SNAPc containing Pol II pre-initiation complex bound to U5 snRNA promoter (CC)
Deposited 2022-05-19
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 22
PDB declaration: 24-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 11
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
7ZX7
Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (CC)
Deposited 2022-05-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 22
PDB declaration: 24-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 11
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
7ZX8
Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC)
Deposited 2022-05-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 22
PDB declaration: 24-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 11
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å
|
|
7ZXE
Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC)
Deposited 2022-05-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 8
PDB declaration: decameric
|
Chain O
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 2
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.50 Å
|
|
8BVW
RNA polymerase II pre-initiation complex with the distal +1 nucleosome (PIC-Nuc18W)
Deposited 2022-12-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 40
PDB declaration: 42-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
ZN ZINC ION × 17
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.00 Å
|
|
8BYQ
RNA polymerase II pre-initiation complex with the proximal +1 nucleosome (PIC-Nuc10W)
Deposited 2022-12-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 38
PDB declaration: 40-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
SF4 IRON/SULFUR CLUSTER × 1
ZN ZINC ION × 16
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.10 Å
|
|
8BZ1
RNA polymerase II core pre-initiation complex with the proximal +1 nucleosome (cPIC-Nuc10W)
Deposited 2022-12-14
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 26
PDB declaration: 28-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 9
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.80 Å
|
|
8GXQ
PIC-Mediator in complex with +1 nucleosome (T40N) in MH-binding state
Deposited 2022-09-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 83
PDB declaration: 87-meric
|
Chain DP
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 19
SF4 IRON/SULFUR CLUSTER × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.04 Å
|
|
8GXS
PIC-Mediator in complex with +1 nucleosome (T40N) in H-binding state
Deposited 2022-09-21
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 83
PDB declaration: 87-meric
|
Chain DP
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 19
SF4 IRON/SULFUR CLUSTER × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.16 Å
|
|
8ITY
human RNA polymerase III pre-initiation complex closed DNA 1
Deposited 2023-03-23
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 23
PDB declaration: 25-meric
|
Chain U
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 7
MG MAGNESIUM ION × 1
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.90 Å
|
|
8IUE
RNA polymerase III pre-initiation complex melting complex 1
Deposited 2023-03-24
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 23
PDB declaration: 25-meric
|
Chain U
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 8
MG MAGNESIUM ION × 1
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 4.10 Å
|
|
8IUH
RNA polymerase III pre-initiation complex open complex 1
Deposited 2023-03-24
|
Different construct
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 23
PDB declaration: 25-meric
|
Chain U
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 8
MG MAGNESIUM ION × 1
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.40 Å
|
|
8S51
RNA polymerase II core initially transcribing complex with an ordered RNA of 8 nt
Deposited 2024-02-22
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 20
PDB declaration: 23-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 10
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å
|
|
8S52
RNA polymerase II core initially transcribing complex with an ordered RNA of 10 nt
Deposited 2024-02-22
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 20
PDB declaration: 23-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 10
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å
|
|
8S5N
RNA polymerase II core initially transcribing complex with an ordered RNA of 12 nt
Deposited 2024-02-24
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 20
PDB declaration: 23-meric
|
Chain O
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 10
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å
|
|
8WAK
Structure of transcribing complex 2 (TC2), the initially transcribing complex with Pol II positioned 2nt downstream of TSS.
Deposited 2023-09-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 48
PDB declaration: 51-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 17
SF4 IRON/SULFUR CLUSTER × 1
W0F [[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.47 Å
|
|
8WAL
Structure of transcribing complex 3 (TC3), the initially transcribing complex with Pol II positioned 3nt downstream of TSS.
Deposited 2023-09-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 48
PDB declaration: 51-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 17
SF4 IRON/SULFUR CLUSTER × 1
W0F [[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate × 1
MG MAGNESIUM ION × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 8.52 Å
|
|
8WAN
Structure of transcribing complex 4 (TC4), the initially transcribing complex with Pol II positioned 4nt downstream of TSS.
Deposited 2023-09-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 48
PDB declaration: 51-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 17
SF4 IRON/SULFUR CLUSTER × 1
MG MAGNESIUM ION × 1
W0F [[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.07 Å
|
|
8WAO
Structure of transcribing complex 5 (TC5), the initially transcribing complex with Pol II positioned 5nt downstream of TSS.
Deposited 2023-09-07
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 48
PDB declaration: 51-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 17
SF4 IRON/SULFUR CLUSTER × 1
MG MAGNESIUM ION × 1
W0F [[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.40 Å
|
|
8WAP
Structure of transcribing complex 6 (TC6), the initially transcribing complex with Pol II positioned 6nt downstream of TSS.
Deposited 2023-09-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 48
PDB declaration: 51-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 17
SF4 IRON/SULFUR CLUSTER × 1
MG MAGNESIUM ION × 1
W0F [[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 5.85 Å
|
|
8WAQ
Structure of transcribing complex 7 (TC7), the initially transcribing complex with Pol II positioned 7nt downstream of TSS.
Deposited 2023-09-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 48
PDB declaration: 51-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 17
SF4 IRON/SULFUR CLUSTER × 1
MG MAGNESIUM ION × 1
W0F [[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.29 Å
|
|
8WAR
Structure of transcribing complex 8 (TC8), the initially transcribing complex with Pol II positioned 8nt downstream of TSS.
Deposited 2023-09-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 48
PDB declaration: 51-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 17
SF4 IRON/SULFUR CLUSTER × 1
MG MAGNESIUM ION × 1
W0F [[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 7.20 Å
|
|
8WAS
Structure of transcribing complex 9 (TC9), the initially transcribing complex with Pol II positioned 9nt downstream of TSS.
Deposited 2023-09-08
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 48
PDB declaration: 51-meric
|
Chain P
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 17
SF4 IRON/SULFUR CLUSTER × 1
MG MAGNESIUM ION × 1
W0F [[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.9
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 6.13 Å
|
|
9FSO
Human RNA Polymerase III Class III Open Pre-initiation Complex 1 (OC1)
Deposited 2024-06-21
|
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 23
PDB declaration: 25-meric
|
Chain R
159–339(181 aa)
|
Not recorded
|
ZN ZINC ION × 9
MG MAGNESIUM ION × 1
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.28 Å
|
|
9FSP
RNA Polymerase III Class III Open Pre-initation Complex 2 (OC2)
Deposited 2024-06-21
|
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 23
PDB declaration: 25-meric
|
Chain R
159–339(181 aa)
|
Not recorded
|
ZN ZINC ION × 9
MG MAGNESIUM ION × 1
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.39 Å
|
|
9FSQ
RNA Polymerase III Class III Melting Pre-Initiation Complex (MC)
Deposited 2024-06-21
|
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 23
PDB declaration: 25-meric
|
Chain R
159–339(181 aa)
|
Not recorded
|
ZN ZINC ION × 9
MG MAGNESIUM ION × 1
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.51 Å
|
|
9FSR
RNA Polymerase III Class III Open Mini Pre-initiation Complex 1 (OC1-mini)
Deposited 2024-06-21
|
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 23
PDB declaration: 25-meric
|
Chain R
159–339(181 aa)
|
Not recorded
|
ZN ZINC ION × 9
MG MAGNESIUM ION × 1
SF4 IRON/SULFUR CLUSTER × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.76 Å
|
|
9K3B
Human RNA Polymerase III de novo transcribing complex 10 overall (TC10-overall)
Deposited 2024-10-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 23
PDB declaration: 26-meric
|
Chain U
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 6
MG MAGNESIUM ION × 1
3AT 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE × 1
SF4 IRON/SULFUR CLUSTER × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 4.80 Å
|
|
9K3U
Human RNA Polymerase III de novo transcribing complex 5 (TC5)
Deposited 2024-10-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 23
PDB declaration: 26-meric
|
Chain U
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 7
MG MAGNESIUM ION × 1
SF4 IRON/SULFUR CLUSTER × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.00 Å
|
|
9K3V
Human RNA Polymerase III de novo transcribing complex 4 (TC4)
Deposited 2024-10-20
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 23
PDB declaration: 26-meric
|
Chain U
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 7
3AT 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE × 1
SF4 IRON/SULFUR CLUSTER × 1
MG MAGNESIUM ION × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.50 Å
|
|
9LXN
Human RNA Polymerase III de novo transcribing complex 5 (TC5)(without 3'dATP)
Deposited 2025-02-18
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 23
PDB declaration: 26-meric
|
Chain U
1–339(339 aa)
|
Not recorded
|
ZN ZINC ION × 7
MG MAGNESIUM ION × 1
SF4 IRON/SULFUR CLUSTER × 1
GTP GUANOSINE-5'-TRIPHOSPHATE × 1
|
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.30 Å
|