5iy8

Human holo-PIC in the initial transcribing state

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

DNA-directed RNA polymerase II subunit RPB1

OrganismNot specified

UniProt P24928

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB1_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–1970; UniProt 1–1970

DNA-directed RNA polymerase II subunit RPB2

OrganismNot specified

UniProt P30876

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB2_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–1174; UniProt 1–1174

DNA-directed RNA polymerase II subunit RPB3

OrganismNot specified

UniProt P19387

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB3_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–275; UniProt 1–275

DNA-directed RNA polymerase II subunit RPB4

OrganismNot specified

UniProt O15514

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB4_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–142; UniProt 1–142

DNA-directed RNA polymerase II subunit RPB5

OrganismNot specified

UniProt P19388

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB1_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–210; UniProt 1–210

DNA-directed RNA polymerase II subunit RPB6

OrganismNot specified

UniProt P61218

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB2_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–127; UniProt 1–127

DNA-directed RNA polymerase II subunit RPB7

OrganismNot specified

UniProt P62487

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB7_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–172; UniProt 1–172

DNA-directed RNA polymerase II subunit RPB8

OrganismNot specified

UniProt P52434

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB3_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain H; PDBConstruct 1–150; UniProt 1–150

DNA-directed RNA polymerase II subunit RPB9

Homo sapiens

UniProt P36954

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB9_HUMAN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain I; PDBConstruct 1–125; UniProt 1–125

DNA-directed RNA polymerase II subunit RPB10

OrganismNot specified

UniProt P62875

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB5_HUMAN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain J; PDBConstruct 1–67; UniProt 1–67

DNA-directed RNA polymerase II subunit RPB11-a

OrganismNot specified

UniProt P52435

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPB11_HUMAN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain K; PDBConstruct 1–117; UniProt 1–117

DNA-directed RNA polymerase II subunit RPB12

OrganismNot specified

UniProt P53803

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RPAB4_HUMAN
Isoform —
PDB entities 12
Chains and sequence ranges Author chain L; PDBConstruct 1–58; UniProt 1–58

Transcription initiation factor IIB

Homo sapiens

UniProt Q00403

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2B_HUMAN
Isoform —
PDB entities 13
Chains and sequence ranges Author chain M; PDBConstruct 1–316; UniProt 1–316

Transcription initiation factor IIA subunit 1

Homo sapiens

UniProt P52655

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2AA_HUMAN
Isoform —
PDB entities 14
Chains and sequence ranges Author chain N; PDBConstruct 1–376; UniProt 1–376

Transcription initiation factor IIA subunit 2

Homo sapiens

UniProt P52657

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2AG_HUMAN
Isoform —
PDB entities 15
Chains and sequence ranges Author chain O; PDBConstruct 1–109; UniProt 1–109

TATA-box-binding protein

Homo sapiens

UniProt P20226

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TBP_HUMAN
Isoform —
PDB entities 16
Chains and sequence ranges Author chain P; PDBConstruct 1–339; UniProt 1–339

General transcription factor IIE subunit 1

Homo sapiens

UniProt P29083

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2EA_HUMAN
Isoform —
PDB entities 17
Chains and sequence ranges Author chain Q; PDBConstruct 1–439; UniProt 1–439

Transcription initiation factor IIE subunit beta

Homo sapiens

UniProt P29084

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2EB_HUMAN
Isoform —
PDB entities 18
Chains and sequence ranges Author chain R; PDBConstruct 1–291; UniProt 1–291

General transcription factor IIF subunit 1

Homo sapiens

UniProt P35269

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2FA_HUMAN
Isoform —
PDB entities 19
Chains and sequence ranges Author chain S; PDBConstruct 1–517; UniProt 1–517

General transcription factor IIF subunit 2

Homo sapiens

UniProt P13984

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2FB_HUMAN
Isoform —
PDB entities 20
Chains and sequence ranges Author chain T; PDBConstruct 1–249; UniProt 1–249

Transcription elongation factor A protein 1

Homo sapiens

UniProt P23193

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TCEA1_HUMAN
Isoform —
PDB entities 21
Chains and sequence ranges Author chain U; PDBConstruct 1–301; UniProt 1–301

TFIIH basal transcription factor complex helicase XPB subunit

OrganismNot specified

UniProt P19447

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ERCC3_HUMAN
Isoform —
PDB entities 22
Chains and sequence ranges Author chain V; PDBConstruct 1–782; UniProt 1–782

TFIIH basal transcription factor complex helicase XPD subunit

OrganismNot specified

UniProt P18074

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ERCC2_HUMAN
Isoform —
PDB entities 23
Chains and sequence ranges Author chain W; PDBConstruct 1–760; UniProt 1–760

General transcription factor IIH subunit 2

OrganismNot specified

UniProt Q13888

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H2_HUMAN
Isoform —
PDB entities 24
Chains and sequence ranges Author chain 0; PDBConstruct 1–395; UniProt 1–395

General transcription factor IIH subunit 5

OrganismNot specified

UniProt Q6ZYL4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 4 × 1 (Q92759) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H5_HUMAN
Isoform —
PDB entities 25
Chains and sequence ranges Author chain 1; PDBConstruct 1–71; UniProt 1–71

General transcription factor IIH subunit 4

OrganismNot specified

UniProt Q92759

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 3 × 1 (Q13889) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H4_HUMAN
Isoform —
PDB entities 26
Chains and sequence ranges Author chain 2; PDBConstruct 1–462; UniProt 1–462

General transcription factor IIH subunit 3

OrganismNot specified

UniProt Q13889

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 27 DNA 2 DNA-directed RNA polymerase II subunit RPB1 × 1 (P24928) DNA-directed RNA polymerase II subunit RPB2 × 1 (P30876) DNA-directed RNA polymerase II subunit RPB3 × 1 (P19387) DNA-directed RNA polymerase II subunit RPB4 × 1 (O15514) DNA-directed RNA polymerase II subunit RPB5 × 1 (P19388) DNA-directed RNA polymerase II subunit RPB6 × 1 (P61218) DNA-directed RNA polymerase II subunit RPB7 × 1 (P62487) DNA-directed RNA polymerase II subunit RPB8 × 1 (P52434) DNA-directed RNA polymerase II subunit RPB9 × 1 (P36954) DNA-directed RNA polymerase II subunit RPB10 × 1 (P62875) DNA-directed RNA polymerase II subunit RPB11-a × 1 (P52435) DNA-directed RNA polymerase II subunit RPB12 × 1 (P53803) Transcription initiation factor IIB × 1 (Q00403) Transcription initiation factor IIA subunit 1 × 1 (P52655) Transcription initiation factor IIA subunit 2 × 1 (P52657) TATA-box-binding protein × 1 (P20226) General transcription factor IIE subunit 1 × 1 (P29083) Transcription initiation factor IIE subunit beta × 1 (P29084) General transcription factor IIF subunit 1 × 1 (P35269) General transcription factor IIF subunit 2 × 1 (P13984) Transcription elongation factor A protein 1 × 1 (P23193) TFIIH basal transcription factor complex helicase XPB subunit × 1 (P19447) TFIIH basal transcription factor complex helicase XPD subunit × 1 (P18074) General transcription factor IIH subunit 2 × 1 (Q13888) General transcription factor IIH subunit 5 × 1 (Q6ZYL4) General transcription factor IIH subunit 4 × 1 (Q92759) SCP-X × 1 SCP-Y × 1 MAGNESIUM ION × 2 ZINC ION × 11 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2H3_HUMAN
Isoform —
PDB entities 27
Chains and sequence ranges Author chain 3; PDBConstruct 1–308; UniProt 1–308

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5iy8
Deposition date deposition_date2016-03-24
Structure title titleHuman holo-PIC in the initial transcribing state
Keywords keywordsinitiation, RNA polymerase II, human, TRANSCRIPTION, TRANSFERASE-DNA complex; TRANSCRIPTION, TRANSFERASE/DNA
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5iy8__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5iy8__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5iy8__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)75.52 Å
Rg (electron density)76.62 Å
Total Rg76.38 Å
Atom count62944
Residues7600
Excluded volume1112600 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5iy8__assembly_1__model_1 29-meric (29) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (31)

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7. Citations (1)