5fur

Structure of human TFIID-IIA bound to core promoter DNA

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

TATA-BOX-BINDING PROTEIN

OrganismNot specified

UniProt P20226

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 10 DNA 2 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 × 1 (P52657) SUPER CORE PROMOTER × 1 SUPER CORE PROMOTER × 1 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1 × 1 (P21675) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7 × 1 (Q15545) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 2 × 1 (Q6P1X5) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 × 2 (P49848) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8 × 1 (Q7Z7C8) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TBP_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–339; UniProt 1–339

TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1

OrganismNot specified

UniProt P52655

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 10 DNA 2 TATA-BOX-BINDING PROTEIN × 1 (P20226) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 × 1 (P52657) SUPER CORE PROMOTER × 1 SUPER CORE PROMOTER × 1 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1 × 1 (P21675) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7 × 1 (Q15545) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 2 × 1 (Q6P1X5) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 × 2 (P49848) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8 × 1 (Q7Z7C8) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TF2AA_HUMAN
Isoform —
PDB entities 2, 3
Chains and sequence ranges Author chain B; PDBConstruct 1–43; UniProt 9–51 Author chain C; PDBConstruct 1–47; UniProt 330–376

TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2

OrganismNot specified

UniProt P52657

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 10 DNA 2 TATA-BOX-BINDING PROTEIN × 1 (P20226) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) SUPER CORE PROMOTER × 1 SUPER CORE PROMOTER × 1 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1 × 1 (P21675) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7 × 1 (Q15545) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 2 × 1 (Q6P1X5) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 × 2 (P49848) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8 × 1 (Q7Z7C8) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name T2AG_HUMAN
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–97; UniProt 3–99

TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1

OrganismNot specified

UniProt P21675

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 10 DNA 2 TATA-BOX-BINDING PROTEIN × 1 (P20226) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 × 1 (P52657) SUPER CORE PROMOTER × 1 SUPER CORE PROMOTER × 1 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7 × 1 (Q15545) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 2 × 1 (Q6P1X5) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 × 2 (P49848) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8 × 1 (Q7Z7C8) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TAF1_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain G; PDBConstruct 1–1893; UniProt 1–1872

TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7

OrganismNot specified

UniProt Q15545

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 10 DNA 2 TATA-BOX-BINDING PROTEIN × 1 (P20226) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 × 1 (P52657) SUPER CORE PROMOTER × 1 SUPER CORE PROMOTER × 1 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1 × 1 (P21675) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 2 × 1 (Q6P1X5) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 × 2 (P49848) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8 × 1 (Q7Z7C8) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TAF7_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain H; PDBConstruct 1–349; UniProt 1–349

TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 2

OrganismNot specified

UniProt Q6P1X5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 10 DNA 2 TATA-BOX-BINDING PROTEIN × 1 (P20226) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 × 1 (P52657) SUPER CORE PROMOTER × 1 SUPER CORE PROMOTER × 1 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1 × 1 (P21675) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7 × 1 (Q15545) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 × 2 (P49848) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8 × 1 (Q7Z7C8) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TAF2_HUMAN
Isoform —
PDB entities 9
Chains and sequence ranges Author chain I; PDBConstruct 1–1199; UniProt 1–1199

TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6

OrganismNot specified

UniProt P49848

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 10 DNA 2 TATA-BOX-BINDING PROTEIN × 1 (P20226) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 × 1 (P52657) SUPER CORE PROMOTER × 1 SUPER CORE PROMOTER × 1 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1 × 1 (P21675) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7 × 1 (Q15545) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 2 × 1 (Q6P1X5) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8 × 1 (Q7Z7C8) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TAF6_HUMAN
Isoform —
PDB entities 10
Chains and sequence ranges Author chain J; PDBConstruct 1–677; UniProt 1–677 Author chain K; PDBConstruct 1–677; UniProt 1–677

TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8

OrganismNot specified

UniProt Q7Z7C8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 10 DNA 2 TATA-BOX-BINDING PROTEIN × 1 (P20226) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 × 1 (P52655) TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 × 1 (P52657) SUPER CORE PROMOTER × 1 SUPER CORE PROMOTER × 1 TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1 × 1 (P21675) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 7 × 1 (Q15545) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 2 × 1 (Q6P1X5) TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 × 2 (P49848) Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TAF8_HUMAN
Isoform —
PDB entities 11
Chains and sequence ranges Author chain L; PDBConstruct 1–310; UniProt 1–310

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5fur
Deposition date deposition_date2016-01-29
Structure title titleStructure of human TFIID-IIA bound to core promoter DNA
Keywords keywordsTFIID, TFIIA, TRANSCRIPTION, RNA POLYMERASE II, GENERAL TRANSCRIPTION FACTORS, PREINITIATION COMPLEX, CORE PROMOTER, DNA BINDING; TRANSCRIPTION
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5fur__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5fur__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5fur__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)77.50 Å
Rg (electron density)77.33 Å
Total Rg77.36 Å
Atom count21485
Residues2413
Excluded volume374310 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5fur__assembly_1__model_1 dodecameric (12) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (11)

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7. Citations (1)