9hvm

In-cell Structure of Pyrenoid Rubisco

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Ribulose bisphosphate carboxylase large chain

OrganismNot specified

UniProt P00877

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Ribulose bisphosphate carboxylase small subunit, chloroplastic 1 × 8 (P00873) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RBL_CHLRE
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–469; UniProt 7–475 Author chain C; PDBConstruct 1–469; UniProt 7–475 Author chain E; PDBConstruct 1–469; UniProt 7–475 Author chain G; PDBConstruct 1–469; UniProt 7–475 Author chain I; PDBConstruct 1–469; UniProt 7–475 Author chain K; PDBConstruct 1–469; UniProt 7–475 Author chain M; PDBConstruct 1–469; UniProt 7–475 Author chain O; PDBConstruct 1–469; UniProt 7–475

Ribulose bisphosphate carboxylase small subunit, chloroplastic 1

Chlamydomonas reinhardtii

UniProt P00873

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 Ribulose bisphosphate carboxylase large chain × 8 (P00877) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RBS1_CHLRE
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–132; UniProt 46–177 Author chain D; PDBConstruct 1–132; UniProt 46–177 Author chain F; PDBConstruct 1–132; UniProt 46–177 Author chain H; PDBConstruct 1–132; UniProt 46–177 Author chain J; PDBConstruct 1–132; UniProt 46–177 Author chain L; PDBConstruct 1–132; UniProt 46–177 Author chain N; PDBConstruct 1–132; UniProt 46–177 Author chain P; PDBConstruct 1–132; UniProt 46–177

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9hvm
Deposition date deposition_date2024-12-30
Structure title titleIn-cell Structure of Pyrenoid Rubisco
Keywords keywordschloroplast, pyrenoid, cryo-ET, cryo-FIB, subtomogram averaging, PHOTOSYNTHESIS; PHOTOSYNTHESIS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9hvm__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9hvm__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9hvm__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)48.28 Å
Rg (electron density)47.44 Å
Total Rg47.78 Å
Atom count37816
Residues4808
Excluded volume672020 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9hvm__assembly_1__model_1 16-meric (16) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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7. Citations (1)