9l41

Structure of WEEV strain 71V1658 virus-like particles (VLPs) in complex with human PCDH10 extracellular cadherin repeats 1-2 (EC1-EC2)(3-fold region)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Structural polyprotein

Western equine encephalitis virus

UniProt Q9J1K1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 9 Structural polyprotein × 3 (C7EPG2) Protocadherin-10 × 3 (Q9P2E7) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q9J1K1_WEEV
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–439; UniProt 798–1236 Author chain C; PDBConstruct 1–439; UniProt 798–1236 Author chain E; PDBConstruct 1–439; UniProt 798–1236

Structural polyprotein

Western equine encephalitis virus

UniProt C7EPG2

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 9 Structural polyprotein × 3 (Q9J1K1) Protocadherin-10 × 3 (Q9P2E7) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name C7EPG2_WEEV
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–418; UniProt 320–737 Author chain D; PDBConstruct 1–418; UniProt 320–737 Author chain F; PDBConstruct 1–418; UniProt 320–737

Protocadherin-10

Homo sapiens

UniProt Q9P2E7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 9 Structural polyprotein × 3 (Q9J1K1) Structural polyprotein × 3 (C7EPG2) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PCD10_HUMAN
Isoform —
PDB entities 3
Chains and sequence ranges Author chain R; PDBConstruct 1–96; UniProt 19–114 Author chain S; PDBConstruct 1–96; UniProt 19–114 Author chain T; PDBConstruct 1–96; UniProt 19–114

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9l41
Deposition date deposition_date2024-12-19
Last revision last_revision2025-08-27
Structure title titleStructure of WEEV strain 71V1658 virus-like particles (VLPs) in complex with human PCDH10 extracellular cadherin repeats 1-2 (EC1-EC2)(3-fold region)
Keywords keywordsWEEV, VLP, E2-E1 glycoproteins, receptor, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9l41__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9l41__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9l41__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)54.96 Å
Rg (electron density)54.60 Å
Total Rg55.03 Å
Atom count22059
Residues2859
Excluded volume392610 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9l41__assembly_1__model_1 nonameric (9) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)