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9prd

In situ structure of the human mitoribosome in the P state from TACO1-knockout cells

Method: ELECTRON MICROSCOPY Dmax: 237.4 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9prd

P(r) Distribution

P(r) distribution for 9prd

1. Structure Basics

entry_id9prd
deposition_date2025-07-23
titleIn situ structure of the human mitoribosome in the P state from TACO1-knockout cells
keywordsmitochondria, mitoribosome, inner membrane, RIBOSOME; RIBOSOME
methodELECTRON MICROSCOPY

Download Data

2. SAXS Parameters (CRYSOL)

rg_guinier91.27
rg_electron95.68
i0140032000000.00
molecular_weight2563800.0 kDa
excluded_volume2945400 ų
envelope_volume4977100 ų
shell_volume399740 ų
envelope_diameter326.4
shell_rg107.70
envelope_rg94.54
shape_rg95.97
total_rg94.98
total_atoms176450
n_residues17268
n_harmonics20
q_range— – 0.5000 −1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3

3. P(r) Analysis (GNOM)

dmax237.4
rg_real88.06
rg_real_error0.42
i0_real1.3380e+11
i0_real_error2.2940e+09
rg_reciprocal92.22
i0_reciprocal140400000000.0000
total_estimate0.9132
solution_quality EXCELLENT a EXCELLENT solution
n_peaks1
r_peak_primary111.7
skewness0.146
kurtosis-0.566
angular_range— – 0.0850 −1
current_alpha0.7631
highest_alpha8369000000.0000
n_real_points18
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.998; Stabil: 0.961; Sysdev: 1.000; Positv: 1.000; Valcen: 0.997; Smooth: 0.000

4. Crystallography & Experiment

5. Entities & Polymer Info (99)

6. Citations (1)

7. Files & Curves (10)