9qpf
Solution structure of Sox2 DBD
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9qpf |
| deposition_date | 2025-03-27 |
| title | Solution structure of Sox2 DBD |
| keywords | HMG, DNA-binding, Pioneer Transcription factor, TRANSCRIPTION; TRANSCRIPTION |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 19.36 Å |
| rg_electron | 19.28 Å |
| i0 | 837635000.00 |
| molecular_weight | 234820.0 kDa |
| excluded_volume | 292370 ų |
| envelope_volume | 110290 ų |
| shell_volume | 33408 ų |
| envelope_diameter | 103.2 Å |
| shell_rg | 34.71 Å |
| envelope_rg | 28.27 Å |
| shape_rg | 19.26 Å |
| total_rg | 19.95 Å |
| total_atoms | 33520 |
| n_residues | 1940 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 87.2 Å |
| rg_real | 19.54 Å |
| rg_real_error | 1.32 Å |
| i0_real | 8.3760e+08 |
| i0_real_error | 1.1960e+07 |
| rg_reciprocal | 19.51 Å |
| i0_reciprocal | 837600000.0000 |
| total_estimate | 0.6939 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 3 |
| r_peak_primary | 20.9 Å |
| skewness | 0.577 |
| kurtosis | 0.273 |
| angular_range | — – 0.4100 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 497900.0000 |
| n_real_points | 72 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.306; Stabil: 0.994; Sysdev: 1.000; Positv: 1.000; Valcen: 0.118; Smooth: 0.997 |