SAXSdb — 9r63

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1. Structure Basics

entry_id	9r63
deposition_date	2025-05-11
title	CPS co-polymerase Wzc_C4
keywords	Capsular polysaccharide secretion pathway, TRANSPORT PROTEIN; TRANSPORT PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	71.39 Å
rg_electron	70.43 Å
i0	4547180000.00
molecular_weight	573800.0 kDa
excluded_volume	720790 Å³
envelope_volume	1326200 Å³
shell_volume	159830 Å³
envelope_diameter	214.9 Å
shell_rg	73.69 Å
envelope_rg	64.68 Å
shape_rg	70.41 Å
total_rg	70.56 Å
total_atoms	81284
n_residues	5168
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	196.3 Å
rg_real	71.10 Å
rg_real_error	0.76 Å
i0_real	4.5460e+09
i0_real_error	7.8950e+07
rg_reciprocal	72.23 Å
i0_reciprocal	4557000000.0000
total_estimate	0.8430
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	98.2 Å
skewness	0.047
kurtosis	-0.488
angular_range	— – 0.1100 Å⁻¹
current_alpha	0.0006
highest_alpha	202500000.0000
n_real_points	23
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.986; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Tyrosine-protein kinase wzc
formula_weight	81557.1 kDa
ec_number	2.7.10.-
src_method	man
entity_count	8

Polymer

type	polypeptide(L)
strand_id	I,J,K,L,M,N,O,P
atom_count	81284

MTEKVKQHAAPVTGSDEIDIGRLVGTVIEARWWVIGITTVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMADQVFTLNVLDNKNYTLSSDGGFSARGQAGQMLKKEGVTLMVEAIHASPGSEFTVTKYSTLGMINQLQNSLTVTENGKDAGVLSLTYTGEDREQIRDILNSIARNYQEQNIERKSAEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKVHPAYRTLLEKRQALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKEQELKITEASTVGDVRIVDPAITQPGVLKPKKGLIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASAYQDYGYYEYEYKSDAKSSGENLYFQGWSHPQFEK

Source

organism	Escherichia coli K-12
ncbi_taxonomy_id	83333
host_organism	Escherichia coli B

Entity 2 non-polymer

description	ADENOSINE-5'-DIPHOSPHATE
formula_weight	427.2 kDa
src_method	syn
entity_count	8

Entity 3 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	8

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.20 Å
resolution_method	—
num_particles	128284

fit	/app/data/saxs_computation/r6/9r63/9r63.fit
pddf	/app/data/pr_computation/r6/9r63/9r63.pr.out
profile	/app/data/saxs_computation/r6/9r63/9r63.dat

CPS co-polymerase Wzc_C4

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D