SAXSdb — 9r6b

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1. Structure Basics

entry_id	9r6b
deposition_date	2025-05-11
title	CPS secretion pathway Wza-Wzc (Conf 4)
keywords	CPS transporter, TRANSPORT PROTEIN; TRANSPORT PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	— Å
rg_electron	117.30 Å
i0	10757100000.00
molecular_weight	883210.0 kDa
excluded_volume	1107400 Å³
envelope_volume	2192700 Å³
shell_volume	180920 Å³
envelope_diameter	373.6 Å
shell_rg	75.16 Å
envelope_rg	110.90 Å
shape_rg	117.20 Å
total_rg	117.00 Å
total_atoms	124704
n_residues	7968
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	319.0 Å
rg_real	110.60 Å
rg_real_error	1.88 Å
i0_real	1.0390e+10
i0_real_error	2.6300e+08
rg_reciprocal	99.10 Å
i0_reciprocal	10180000000.0000
total_estimate	0.8824
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	98.1 Å
skewness	0.443
kurtosis	-0.831
angular_range	— – 0.0650 Å⁻¹
current_alpha	0.6748
highest_alpha	379400000.0000
n_real_points	14
gnom_version	4.1.3
quality_criteria	AN1: 0.001; Oscil: 0.859; Stabil: 0.956; Sysdev: 1.000; Positv: 1.000; Valcen: 0.952; Smooth: 0.076

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Putative polysaccharide export protein Wza
formula_weight	43873.8 kDa
src_method	man
entity_count	8

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F,G,H
atom_count	124704

MMKSKMKLMPLLVSVTLISGCTVLPGSNMSTMGKDVIKQQDADFDLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVGPGDVLNVTVWDHPELTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDITGRLATYIADPQVDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTADWRNVVLTHNGREERISLQALMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGMTLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGRNGKIANIYQLDMSDATSLVMATEFRLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNWENLYFQSWSHPQFEK

Source

organism	Escherichia coli K-12
ncbi_taxonomy_id	83333
host_organism	Escherichia coli B

Entity 2 polymer

description	Tyrosine-protein kinase wzc
formula_weight	81557.1 kDa
ec_number	2.7.10.-
src_method	man
entity_count	8

Polymer

type	polypeptide(L)
strand_id	I,J,K,L,M,N,O,P

MTEKVKQHAAPVTGSDEIDIGRLVGTVIEARWWVIGITTVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMADQVFTLNVLDNKNYTLSSDGGFSARGQAGQMLKKEGVTLMVEAIHASPGSEFTVTKYSTLGMINQLQNSLTVTENGKDAGVLSLTYTGEDREQIRDILNSIARNYQEQNIERKSAEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKVHPAYRTLLEKRQALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKEQELKITEASTVGDVRIVDPAITQPGVLKPKKGLIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASAYQDYGYYEYEYKSDAKSSGENLYFQGWSHPQFEK

Source

organism	Escherichia coli K-12
ncbi_taxonomy_id	83333
host_organism	Escherichia coli B

Entity 3 non-polymer

description	ADENOSINE-5'-DIPHOSPHATE
formula_weight	427.2 kDa
src_method	syn
entity_count	8

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	4.60 Å
resolution_method	—
num_particles	40245

fit	/app/data/saxs_computation/r6/9r6b/9r6b.fit
pddf	/app/data/pr_computation/r6/9r6b/9r6b.pr.out
profile	/app/data/saxs_computation/r6/9r6b/9r6b.dat

CPS secretion pathway Wza-Wzc (Conf 4)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)