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9rja

Manikomycin bound to the Escherichia coli 70S ribosome

Method: ELECTRON MICROSCOPY Dmax: 291.6 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9rja

P(r) Distribution

P(r) distribution for 9rja

1. Structure Basics

entry_id9rja
deposition_date2025-06-12
titleManikomycin bound to the Escherichia coli 70S ribosome
keywordsManikomycin, Antibiotic, Ribosome, E-site, Translation, Elongation, Cryo-EM; ANTIBIOTIC
methodELECTRON MICROSCOPY

Download Data

2. SAXS Parameters (CRYSOL)

rg_guinier82.74
rg_electron83.71
i0142567000000.00
molecular_weight2085800.0 kDa
excluded_volume2140200 ų
envelope_volume3687700 ų
shell_volume337840 ų
envelope_diameter279.9
shell_rg97.05
envelope_rg81.99
shape_rg83.78
total_rg83.63
total_atoms140085
n_residues9932
n_harmonics20
q_range— – 0.5000 −1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3

3. P(r) Analysis (GNOM)

dmax291.6
rg_real85.04
rg_real_error1.73
i0_real1.4170e+11
i0_real_error3.1770e+09
rg_reciprocal83.95
i0_reciprocal143100000000.0000
total_estimate0.9044
solution_quality EXCELLENT a EXCELLENT solution
n_peaks2
r_peak_primary107.4
skewness0.391
kurtosis0.046
angular_range— – 0.0950 −1
current_alpha1.0930
highest_alpha10530000000.0000
n_real_points20
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.774; Stabil: 0.914; Sysdev: 1.000; Positv: 1.000; Valcen: 0.964; Smooth: 0.775

4. Crystallography & Experiment

5. Entities & Polymer Info (62)

6. Citations (1)

7. Files & Curves (10)