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9she

Structure of the honeybee GABAA RDL receptor with GABA and Abamectin

Method: ELECTRON MICROSCOPY D_max: 126.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9she
deposition_date	2025-08-26
title	Structure of the honeybee GABAA RDL receptor with GABA and Abamectin
keywords	GABAA receptor, insect, neurotransmission, insecticides, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	38.94 Å
rg_electron	38.25 Å
i0	1154660000.00
molecular_weight	190870.0 kDa
excluded_volume	187630 Å³
envelope_volume	333510 Å³
shell_volume	70326 Å³
envelope_diameter	126.8 Å
shell_rg	45.87 Å
envelope_rg	38.01 Å
shape_rg	38.24 Å
total_rg	38.59 Å
total_atoms	14470
n_residues	1740
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	126.6 Å
rg_real	38.81 Å
rg_real_error	1.06 Å
i0_real	1.1550e+09
i0_real_error	2.0300e+07
rg_reciprocal	38.89 Å
i0_reciprocal	1155000000.0000
total_estimate	0.8781
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	46.3 Å
skewness	0.297
kurtosis	-0.299
angular_range	— – 0.2050 Å⁻¹
current_alpha	0.0000
highest_alpha	91270000.0000
n_real_points	42
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.842; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.989; Smooth: 0.895

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Gamma-aminobutyric acid receptor subunit beta
formula_weight	53517.4 kDa
mutation	0
src_method	man
entity_count	5

Polymer

type	polypeptide(L)
strand_id	A,C,B,D,E
atom_count	14470

MSFHAASWSFALLAATVALLPATHRAPFAQAATGGGSMLNDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARENPGPPGVPGDHGDHAPKQTVRFKVHDPKAHSKGGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLEEAK

Source

organism	Apis mellifera
common_name	honey bee
ncbi_taxonomy_id	7460
host_organism	Spodoptera aff. frugiperda 1 BOLD-2017

Entity 2 non-polymer

description	GAMMA-AMINO-BUTANOIC ACID
formula_weight	103.1 kDa
src_method	syn
entity_count	5

Entity 3 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	syn
entity_count	10

Entity 4 non-polymer

description	Abamectin
formula_weight	873.1 kDa
src_method	syn
entity_count	5

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	triclinic

resolution	3.20 Å
resolution_method	—
num_particles	30111

fit	/app/data/saxs_computation/sh/9she/9she.fit
pddf	/app/data/pr_computation/sh/9she/9she.pr.out
profile	/app/data/saxs_computation/sh/9she/9she.dat