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9sho

Structure of the honeybee GABAA RDL receptor with GABA

Method: ELECTRON MICROSCOPY D_max: 120.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9sho
deposition_date	2025-08-27
title	Structure of the honeybee GABAA RDL receptor with GABA
keywords	GABAA receptor, insect, neurotransmission, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	38.17 Å
rg_electron	37.52 Å
i0	508864000.00
molecular_weight	194180.0 kDa
excluded_volume	247120 Å³
envelope_volume	319820 Å³
shell_volume	68844 Å³
envelope_diameter	122.2 Å
shell_rg	45.32 Å
envelope_rg	37.03 Å
shape_rg	37.53 Å
total_rg	37.99 Å
total_atoms	13675
n_residues	1680
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	120.4 Å
rg_real	37.99 Å
rg_real_error	0.66 Å
i0_real	5.0890e+08
i0_real_error	8.6180e+06
rg_reciprocal	38.11 Å
i0_reciprocal	508900000.0000
total_estimate	0.8788
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	47.0 Å
skewness	0.237
kurtosis	-0.326
angular_range	— – 0.2050 Å⁻¹
current_alpha	0.0000
highest_alpha	76370000.0000
n_real_points	42
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.876; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.978; Smooth: 0.813

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Gamma-aminobutyric acid receptor subunit beta
formula_weight	53517.4 kDa
src_method	man
entity_count	5

Polymer

type	polypeptide(L)
strand_id	A,E,D,B,C
atom_count	13675

MSFHAASWSFALLAATVALLPATHRAPFAQAATGGGSMLNDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARENPGPPGVPGDHGDHAPKQTVRFKVHDPKAHSKGGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLEEAK

Source

organism	Apis mellifera
common_name	honey bee
ncbi_taxonomy_id	7460
host_organism	Spodoptera aff. frugiperda 1 BOLD-2017

Entity 2 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	syn
entity_count	10

Entity 3 non-polymer

description	GAMMA-AMINO-BUTANOIC ACID
formula_weight	103.1 kDa
src_method	syn
entity_count	5

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.56 Å
resolution_method	—
num_particles	290250

fit	/app/data/saxs_computation/sh/9sho/9sho.fit
pddf	/app/data/pr_computation/sh/9sho/9sho.pr.out
profile	/app/data/saxs_computation/sh/9sho/9sho.dat