Structure of the honeybee GABAA RDL receptor apo state

Method: ELECTRON MICROSCOPY D_max: 120.7 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9sio
deposition_date	2025-08-29
title	Structure of the honeybee GABAA RDL receptor apo state
keywords	GABAA receptor, insect, neurotransmission, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	38.32 Å
rg_electron	37.59 Å
i0	507171000.00
molecular_weight	193720.0 kDa
excluded_volume	246430 Å³
envelope_volume	316460 Å³
shell_volume	68076 Å³
envelope_diameter	122.8 Å
shell_rg	45.35 Å
envelope_rg	37.08 Å
shape_rg	37.59 Å
total_rg	38.07 Å
total_atoms	13645
n_residues	1690
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	120.7 Å
rg_real	38.14 Å
rg_real_error	0.69 Å
i0_real	5.0720e+08
i0_real_error	7.7880e+06
rg_reciprocal	38.26 Å
i0_reciprocal	507200000.0000
total_estimate	0.5978
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	47.1 Å
skewness	0.238
kurtosis	-0.374
angular_range	— – 0.2050 Å⁻¹
current_alpha	0.0000
highest_alpha	74670000.0000
n_real_points	42
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.893; Stabil: 1.000; Sysdev: 0.035; Positv: 1.000; Valcen: 0.982; Smooth: 0.000

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.90 Å
resolution_method	—
num_particles	54629

description	Gamma-aminobutyric acid receptor subunit beta
formula_weight	53517.4 kDa
src_method	man
entity_count	5

type	polypeptide(L)
strand_id	A,B,E,C,D
atom_count	13645

Structure of the honeybee GABAA RDL receptor apo state

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Apis mellifera
common_name	honey bee
ncbi_taxonomy_id	7460
host_organism	Spodoptera aff. frugiperda 1 BOLD-2017

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	syn
entity_count	5

fit	/app/data/saxs_computation/si/9sio/9sio.fit
pddf	/app/data/pr_computation/si/9sio/9sio.pr.out
profile	/app/data/saxs_computation/si/9sio/9sio.dat