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9siq

Structure of the honeybee GABAA RDL receptor with Chrodrimanin B

Method: ELECTRON MICROSCOPY D_max: 133.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9siq
deposition_date	2025-08-29
title	Structure of the honeybee GABAA RDL receptor with Chrodrimanin B
keywords	GABAA receptor, insect, neurotransmission, insecticides, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	40.22 Å
rg_electron	39.46 Å
i0	1213430000.00
molecular_weight	193740.0 kDa
excluded_volume	189160 Å³
envelope_volume	338990 Å³
shell_volume	70068 Å³
envelope_diameter	133.0 Å
shell_rg	46.41 Å
envelope_rg	39.23 Å
shape_rg	39.39 Å
total_rg	39.87 Å
total_atoms	14645
n_residues	1765
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	133.6 Å
rg_real	40.18 Å
rg_real_error	1.35 Å
i0_real	1.2130e+09
i0_real_error	2.4600e+07
rg_reciprocal	40.22 Å
i0_reciprocal	1213000000.0000
total_estimate	0.8051
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	48.0 Å
skewness	0.358
kurtosis	-0.313
angular_range	— – 0.1950 Å⁻¹
current_alpha	0.0000
highest_alpha	87860000.0000
n_real_points	40
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.821; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	Gamma-aminobutyric acid receptor subunit beta
formula_weight	53517.4 kDa
src_method	man
entity_count	5

Polymer

type	polypeptide(L)
strand_id	A,B,D,E,C
atom_count	14645

MSFHAASWSFALLAATVALLPATHRAPFAQAATGGGSMLNDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARENPGPPGVPGDHGDHAPKQTVRFKVHDPKAHSKGGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLEEAK

Source

organism	Apis mellifera
common_name	honey bee
ncbi_taxonomy_id	7460
host_organism	Spodoptera frugiperda

Entity 2 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	syn
entity_count	10

Entity 3 non-polymer

description	;[(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8Z)-icosa-5,8,11,14-tetraenoate ;
formula_weight	1047.1 kDa
src_method	syn
entity_count	5

Entity 4 non-polymer

description	Chrodrimanin B
formula_weight	484.5 kDa
src_method	syn
entity_count	5

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.96 Å
resolution_method	—
num_particles	33309

fit	/app/data/saxs_computation/si/9siq/9siq.fit
pddf	/app/data/pr_computation/si/9siq/9siq.pr.out
profile	/app/data/saxs_computation/si/9siq/9siq.dat