← Back to search

9unl

Cryo-EM structure of the human prohibitin complex

Method: ELECTRON MICROSCOPY D_max: 187.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	9unl
deposition_date	2025-04-23
title	Cryo-EM structure of the human prohibitin complex
keywords	prohibitin, MEMBRANE PROTEIN; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	61.96 Å
rg_electron	61.82 Å
i0	2320160000.00
molecular_weight	406140.0 kDa
excluded_volume	510090 Å³
envelope_volume	890420 Å³
shell_volume	118810 Å³
envelope_diameter	184.2 Å
shell_rg	66.78 Å
envelope_rg	58.43 Å
shape_rg	61.86 Å
total_rg	61.81 Å
total_atoms	28626
n_residues	3663
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	187.7 Å
rg_real	61.69 Å
rg_real_error	1.72 Å
i0_real	2.3200e+09
i0_real_error	4.7980e+07
rg_reciprocal	62.15 Å
i0_reciprocal	2322000000.0000
total_estimate	0.8491
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	75.1 Å
skewness	0.046
kurtosis	-0.767
angular_range	— – 0.1250 Å⁻¹
current_alpha	0.0000
highest_alpha	94350000.0000
n_real_points	26
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.987; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.078

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

Entity 1 polymer

description	Prohibitin 1
formula_weight	32799.0 kDa
src_method	man
entity_count	11

Polymer

type	polypeptide(L)
strand_id	E,C,A,U,S,Q,O,M,K,I,G
atom_count	28626

MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQLEDYKDHDGDYKDHDIDYKDDDDK

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 2 polymer

description	Prohibitin-2
formula_weight	33341.4 kDa
src_method	man
entity_count	11

Polymer

type	polypeptide(L)
strand_id	F,D,B,V,T,R,P,N,L,J,H

MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens neanderthalensis

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.800 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	2.80 Å
resolution_method	—
num_particles	268512

fit	/app/data/saxs_computation/un/9unl/9unl.fit
pddf	/app/data/pr_computation/un/9unl/9unl.pr.out
profile	/app/data/saxs_computation/un/9unl/9unl.dat

Cryo-EM structure of the human prohibitin complex

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)