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9v1l

Cryo- EM structure of large subunit (LSU) of 75S ribosome with P- tRNA from Entamoeba histolytica

Method: ELECTRON MICROSCOPY Dmax: 283.2 Å Quality: GOOD

SAXS Profile

SAXS profile for 9v1l

P(r) Distribution

P(r) distribution for 9v1l
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1. Structure Basics

entry_id9v1l
deposition_date2025-05-19
last_revision2025-10-15
titleCryo- EM structure of large subunit (LSU) of 75S ribosome with P- tRNA from Entamoeba histolytica
keywordsLSU with P-tRNA CCA end, Ribosome, Entamoeba histolytica; RIBOSOME
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier75.24 Å
rg_electron76.49 Å
i096229200000.00
molecular_weight1814100.0 kDa
excluded_volume1927200 ų
envelope_volume3086000 ų
shell_volume304480 ų
envelope_diameter258.3 Å
shell_rg91.03 Å
envelope_rg76.43 Å
shape_rg76.54 Å
total_rg76.46 Å
total_atoms122723
n_residues9640
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax283.2 Å
rg_real78.59 Å
rg_real_error1.52 Å
i0_real9.6330e+10
i0_real_error2.1210e+09
rg_reciprocal76.10 Å
i0_reciprocal96450000000.0000
total_estimate0.8768
solution_quality GOOD a GOOD solution
n_peaks2
r_peak_primary94.4 Å
skewness0.560
kurtosis0.465
angular_range— – 0.1050 Å−1
current_alpha0.9463
highest_alpha14940000000.0000
n_real_points22
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.628; Stabil: 0.888; Sysdev: 1.000; Positv: 1.000; Valcen: 0.949; Smooth: 0.918
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4. Crystallography & Experiment

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5. Entities & Polymer Info (45)

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6. Citations (1)

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7. Files & Curves (10)