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9v24

Cryo- EM structure of 75S ribosome with A/P- & P/E- tRNAs from Entamoeba histolytica

Method: ELECTRON MICROSCOPY Dmax: 229.5 Å Quality: EXCELLENT

SAXS Profile

SAXS profile for 9v24

P(r) Distribution

P(r) distribution for 9v24
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1. Structure Basics

entry_id9v24
deposition_date2025-05-19
last_revision2025-10-15
titleCryo- EM structure of 75S ribosome with A/P- & P/E- tRNAs from Entamoeba histolytica
keywords75S Ribosome, A/P-tRNA, P/E-tRNA, Entamoeba histolytica, Ribosome; RIBOSOME
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier89.24 Å
rg_electron91.07 Å
i0214017000000.00
molecular_weight2742100.0 kDa
excluded_volume2932700 ų
envelope_volume4933600 ų
shell_volume410430 ų
envelope_diameter290.9 Å
shell_rg106.40 Å
envelope_rg90.07 Å
shape_rg91.16 Å
total_rg90.93 Å
total_atoms185725
n_residues14930
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax229.5 Å
rg_real86.95 Å
rg_real_error0.31 Å
i0_real2.0500e+11
i0_real_error3.0860e+09
rg_reciprocal90.77 Å
i0_reciprocal215000000000.0000
total_estimate0.9102
solution_quality EXCELLENT a EXCELLENT solution
n_peaks1
r_peak_primary108.0 Å
skewness0.098
kurtosis-0.618
angular_range— – 0.0850 Å−1
current_alpha1.0360
highest_alpha16810000000.0000
n_real_points18
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 1.000; Stabil: 0.951; Sysdev: 1.000; Positv: 1.000; Valcen: 0.981; Smooth: 0.000
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4. Crystallography & Experiment

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5. Entities & Polymer Info (77)

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6. Citations (1)

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7. Files & Curves (10)