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9v29

;Cryo- EM structure of small subunit (body) of 75S ribosome with A/P- & P/E- tRNAs from Entamoeba histolytica bound to antibiotic paromomycin ;

Method: ELECTRON MICROSCOPY Dmax: 184.8 Å Quality: GOOD

SAXS Profile

SAXS profile for 9v29

P(r) Distribution

P(r) distribution for 9v29
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1. Structure Basics

entry_id9v29
deposition_date2025-05-19
last_revision2025-10-08
title;Cryo- EM structure of small subunit (body) of 75S ribosome with A/P- & P/E- tRNAs from Entamoeba histolytica bound to antibiotic paromomycin ;
keywordsSSU-body of 75S Ribosome-PAR complex, A/P-tRNA, P/E-tRNA, Entamoeba histolytica, Ribosome; RIBOSOME
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier52.59 Å
rg_electron53.27 Å
i06834600000.00
molecular_weight454750.0 kDa
excluded_volume469070 ų
envelope_volume739150 ų
shell_volume114240 ų
envelope_diameter202.1 Å
shell_rg57.69 Å
envelope_rg52.88 Å
shape_rg53.28 Å
total_rg53.33 Å
total_atoms30600
n_residues2218
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax184.8 Å
rg_real52.69 Å
rg_real_error1.85 Å
i0_real6.8350e+09
i0_real_error1.4870e+08
rg_reciprocal52.49 Å
i0_reciprocal6833000000.0000
total_estimate0.8512
solution_quality GOOD a GOOD solution
n_peaks2
r_peak_primary55.5 Å
skewness0.486
kurtosis-0.102
angular_range— – 0.1500 Å−1
current_alpha0.0000
highest_alpha833700000.0000
n_real_points31
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.741; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.997; Smooth: 0.842
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4. Crystallography & Experiment

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5. Entities & Polymer Info (20)

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6. Citations (1)

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7. Files & Curves (10)