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9v26

Cryo- EM structure of 75S ribosome with A/P- & P/E- tRNAs from Entamoeba histolytica bound to antibiotic paromomycin

Method: ELECTRON MICROSCOPY Dmax: 305.9 Å Quality: GOOD

SAXS Profile

SAXS profile for 9v26

P(r) Distribution

P(r) distribution for 9v26
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1. Structure Basics

entry_id9v26
deposition_date2025-05-19
last_revision2025-10-08
titleCryo- EM structure of 75S ribosome with A/P- & P/E- tRNAs from Entamoeba histolytica bound to antibiotic paromomycin
keywords75S Ribosome-PAR complex, A/P-tRNA, P/E-tRNA, Entamoeba histolytica, Ribosome; RIBOSOME
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier88.01 Å
rg_electron89.46 Å
i0202849000000.00
molecular_weight2642400.0 kDa
excluded_volume2809900 ų
envelope_volume4714000 ų
shell_volume399380 ų
envelope_diameter280.8 Å
shell_rg104.90 Å
envelope_rg88.39 Å
shape_rg89.53 Å
total_rg89.36 Å
total_atoms178778
n_residues14104
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax305.9 Å
rg_real90.10 Å
rg_real_error1.63 Å
i0_real2.0090e+11
i0_real_error4.4810e+09
rg_reciprocal89.54 Å
i0_reciprocal203800000000.0000
total_estimate0.8975
solution_quality GOOD a GOOD solution
n_peaks2
r_peak_primary119.0 Å
skewness0.354
kurtosis-0.038
angular_range— – 0.0900 Å−1
current_alpha1.2260
highest_alpha21930000000.0000
n_real_points19
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.796; Stabil: 0.913; Sysdev: 1.000; Positv: 1.000; Valcen: 0.911; Smooth: 0.641
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4. Crystallography & Experiment

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5. Entities & Polymer Info (75)

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6. Citations (1)

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7. Files & Curves (10)