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9v25

Cryo- EM structure of large subunit (LSU) of 75S ribosome with A/P- & P/E- tRNAs from Entamoeba histolytica

Method: ELECTRON MICROSCOPY Dmax: 283.0 Å Quality: GOOD

SAXS Profile

SAXS profile for 9v25

P(r) Distribution

P(r) distribution for 9v25
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1. Structure Basics

entry_id9v25
deposition_date2025-05-19
last_revision2025-10-15
titleCryo- EM structure of large subunit (LSU) of 75S ribosome with A/P- & P/E- tRNAs from Entamoeba histolytica
keywordsLarge Subunit of Ribosome, A/P-tRNA, P/E-tRNA, Entamoeba histolytica, Ribosome; RIBOSOME
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier75.20 Å
rg_electron76.56 Å
i096203100000.00
molecular_weight1818700.0 kDa
excluded_volume1935000 ų
envelope_volume3092300 ų
shell_volume305110 ų
envelope_diameter256.0 Å
shell_rg91.10 Å
envelope_rg76.43 Å
shape_rg76.61 Å
total_rg76.52 Å
total_atoms123062
n_residues9704
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax283.0 Å
rg_real78.54 Å
rg_real_error1.86 Å
i0_real9.6300e+10
i0_real_error2.0360e+09
rg_reciprocal76.07 Å
i0_reciprocal96420000000.0000
total_estimate0.8766
solution_quality GOOD a GOOD solution
n_peaks2
r_peak_primary94.3 Å
skewness0.560
kurtosis0.468
angular_range— – 0.1050 Å−1
current_alpha0.9459
highest_alpha14430000000.0000
n_real_points22
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.627; Stabil: 0.888; Sysdev: 1.000; Positv: 1.000; Valcen: 0.948; Smooth: 0.918
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4. Crystallography & Experiment

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5. Entities & Polymer Info (46)

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6. Citations (1)

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7. Files & Curves (10)