Structure of MPXV M1R and hmMM1-40 Fab complex

entry_id	9vhz
deposition_date	2025-06-17
title	Structure of MPXV M1R and hmMM1-40 Fab complex
keywords	MPXV, neutralizing antibody, poxvirus, M1R, VIRAL PROTEIN/IMMUNE SYSTEM, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex; VIRAL PROTEIN/IMMUNE SYSTEM
method	X-RAY DIFFRACTION

rg_guinier	32.03 Å
rg_electron	32.26 Å
i0	72446300.00
molecular_weight	65901.0 kDa
excluded_volume	81822 ų
envelope_volume	105530 ų
shell_volume	30282 ų
envelope_diameter	115.7 Å
shell_rg	35.48 Å
envelope_rg	32.30 Å
shape_rg	32.22 Å
total_rg	32.65 Å
total_atoms	4629
n_residues	606
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	114.4 Å
rg_real	32.49 Å
rg_real_error	1.40 Å
i0_real	7.2450e+07
i0_real_error	1.3570e+06
rg_reciprocal	32.30 Å
i0_reciprocal	72430000.0000
total_estimate	0.8040
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	28.0 Å
skewness	0.638
kurtosis	-0.140
angular_range	— – 0.2450 Å−1
current_alpha	0.0000
highest_alpha	12500000.0000
n_real_points	50
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.648; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.642; Smooth: 0.866

Unit Cell

length_a	61.361 Å
length_b	72.353 Å
length_c	170.587 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

Symmetry

space_group	P 21 21 21
int_tables_number	19
crystal_system	orthorhombic

Refinement

resolution	2.800 Å
resolution_low	55.180 Å
r_factor	0.2118
r_work	0.2075
r_free	0.2957

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/vh/9vhz/pr_distribution.json
• pr_output /app/data/pr_computation/vh/9vhz/9vhz.pr.out
• pr_plot /app/data/visualization/pr_computation/vh/9vhz/9vhz_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/vh/9vhz/9vhz.dat
• saxs_fit /app/data/saxs_computation/vh/9vhz/9vhz.fit
• saxs_log /app/data/saxs_computation/vh/9vhz/9vhz.log
• saxs_plot /app/data/visualization/saxs_computation/vh/9vhz/9vhz_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/vh/9vhz/9vhz.fit
pddf	/app/data/pr_computation/vh/9vhz/9vhz.pr.out
profile	/app/data/saxs_computation/vh/9vhz/9vhz.dat