SAXSdb — 9wai

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1. Structure Basics

entry_id	9wai
deposition_date	2025-08-12
title	Yeast-expressed polio type 1 stablized virus-like particles with 3G10 Fab
keywords	;Poliovirus type 1, virus-like particles, antibody, VIRAL PROTEIN, VIRUS LIKE PARTICLE/IMMUNE SYSTEM, VIRUS LIKE PARTICLE-IMMUNE SYSTEM complex ;; VIRUS LIKE PARTICLE/IMMUNE SYSTEM
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	40.23 Å
rg_electron	40.12 Å
i0	282317000.00
molecular_weight	135250.0 kDa
excluded_volume	168700 Å³
envelope_volume	233610 Å³
shell_volume	50578 Å³
envelope_diameter	146.1 Å
shell_rg	42.94 Å
envelope_rg	40.57 Å
shape_rg	40.07 Å
total_rg	40.47 Å
total_atoms	9519
n_residues	1222
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	138.7 Å
rg_real	40.50 Å
rg_real_error	1.33 Å
i0_real	2.8230e+08
i0_real_error	4.8150e+06
rg_reciprocal	40.23 Å
i0_reciprocal	282200000.0000
total_estimate	0.8286
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	39.1 Å
skewness	0.562
kurtosis	-0.246
angular_range	— – 0.1950 Å⁻¹
current_alpha	0.0000
highest_alpha	35100000.0000
n_real_points	40
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.741; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.821; Smooth: 0.723

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4. Crystallography & Experiment

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5. Entities & Polymer Info (6)

Entity 1 polymer

description	Capsid protein VP1
formula_weight	33451.6 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	D
atom_count	9519

GLGQMLESMIDNTVRETVGAATSRDALPNTEASGPTHSKEIPALTAVETGATNPLVPSDTVQTRHVVQHRSRSESSIESFFARGACVTIMTVDNSASTTNKDKLFAVWKITYKDTVQLRRKLEFFTYSRFDMELTFVVTANFTETNNGHALNQVYQIMYVPPGAPVPEKWDDYTWQTSSNPSIFYTYGTAPARISLPYVGISNAYSHFYDGFSKVPLKDQSAALGDSLYGAASLNDFGILAVRVVNDPNPTKVTSKIRVYLKPKHIRVWCPRPPRAVAYYGPGVDYKDGTLTPLSTKDLTTY

Source

organism	Poliovirus 1
ncbi_taxonomy_id	12080
host_organism	Komagataella pastoris

Entity 2 polymer

description	Capsid protein VP3
formula_weight	26550.5 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C

GLPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEIDTMIPFDLSATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTFMFCGSMMATGKLLVSYAPPGADPPKKRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRLTIDDSFTEGGYISVFYQTRIVVPLSTPREMDILGFVSACNDFSVRLLRDTTHIEQKALAQ

Source

organism	Poliovirus 1
ncbi_taxonomy_id	12080
host_organism	Komagataella pastoris

Entity 3 polymer

description	Capsid protein VP2
formula_weight	30059.8 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

SPNIEACGYSDRVLQLTLGNSTITAQEAANSVVAYGRWPEYLRDSEANPVDQPTEPEVAACRFYTLDTVSWTKESRGWWWKLPDALRDMGLFGQNMYYHYLGRSGYTVHVQCNASKFHQGALGVFAVPEMCLAGDSNTTTMHTSYQNANPGEKGGTFTGTFTPDNNQTSPARRFCPVDYLLGNGTLLGNAFVFPHQIINLRTNNCATLVLPYVNSLSIDSMVKHNNWGIAILPLAPLNFASESSPEIPITLTIAPMCCEFNGLRNITLPRLQ

Source

organism	Poliovirus 1
ncbi_taxonomy_id	12080
host_organism	Komagataella pastoris

Entity 4 polymer

description	heavy chain
formula_weight	24369.2 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	E

EVKLVESGGGFVQPGGSLRLSCSTSGFTFTDYFMNWVRQPPGKALEWLGFIRNKANVYTTDYSAAVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCVRDRGYDYDVSYYNVMDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKI

Source

organism	Mus musculus
ncbi_taxonomy_id	10090
host_organism	Mus musculus

Entity 5 polymer

description	light chain
formula_weight	23755.3 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	F

DIVMTQSHKFMSTSVGDRVSITCKASQDVSTAIAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDYTLTISSVQAEDLALYYCQQHYNTPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

Source

organism	Mus musculus
ncbi_taxonomy_id	10090
host_organism	Mus musculus

Entity 6 polymer

description	Capsid protein VP4
formula_weight	7424.1 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A

MGAQVSSQKVGAHENSNGAYGGSTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN

Source

organism	Poliovirus 1
ncbi_taxonomy_id	12080
host_organism	Komagataella pastoris

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.60 Å
resolution_method	—
num_particles	17984

fit	/app/data/saxs_computation/wa/9wai/9wai.fit
pddf	/app/data/pr_computation/wa/9wai/9wai.pr.out
profile	/app/data/saxs_computation/wa/9wai/9wai.dat

Yeast-expressed polio type 1 stablized virus-like particles with 3G10 Fab

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (6)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 polymer

Polymer

Source

Entity 5 polymer

Polymer

Source

Entity 6 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)