9yk3
Room-temperature X-ray structure of D132N Bacillus halodurans RNase H1 in complex with complementary RNA/DNA duplex
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9yk3 |
| deposition_date | 2025-10-06 |
| title | Room-temperature X-ray structure of D132N Bacillus halodurans RNase H1 in complex with complementary RNA/DNA duplex |
| keywords | rna hydrolase, nucleic acid binding, RNA/DNA hybrid, HYDROLASE, HYDROLASE-RNA-DNA complex; HYDROLASE/RNA/DNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 16.48 Å |
| rg_electron | 15.31 Å |
| i0 | 8304910.00 |
| molecular_weight | 19111.0 kDa |
| excluded_volume | 22999 ų |
| envelope_volume | 26224 ų |
| shell_volume | 14405 ų |
| envelope_diameter | 55.0 Å |
| shell_rg | 21.30 Å |
| envelope_rg | 15.71 Å |
| shape_rg | 15.29 Å |
| total_rg | 16.34 Å |
| total_atoms | 1336 |
| n_residues | 146 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 53.6 Å |
| rg_real | 16.38 Å |
| rg_real_error | 0.36 Å |
| i0_real | 8.3050e+06 |
| i0_real_error | 1.0010e+05 |
| rg_reciprocal | 16.39 Å |
| i0_reciprocal | 8305000.0000 |
| total_estimate | 0.8123 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 3 |
| r_peak_primary | 20.6 Å |
| skewness | 0.171 |
| kurtosis | -0.389 |
| angular_range | — – 0.4850 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1376000.0000 |
| n_real_points | 79 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.853; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.000 |