9yk5
100K X-ray structure of mixed metal D132N Bacillus halodurans RNase H1 complex with RNA/DNA duplex
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9yk5 |
| deposition_date | 2025-10-06 |
| title | 100K X-ray structure of mixed metal D132N Bacillus halodurans RNase H1 complex with RNA/DNA duplex |
| keywords | rna hydrolase, nucleic acid binding, RNA/DNA hybrid, mixed metal complex, HYDROLASE, HYDROLASE-RNA-DNA complex; HYDROLASE/RNA/DNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 16.57 Å |
| rg_electron | 15.41 Å |
| i0 | 8520740.00 |
| molecular_weight | 19220.0 kDa |
| excluded_volume | 23047 ų |
| envelope_volume | 26578 ų |
| shell_volume | 14486 ų |
| envelope_diameter | 54.2 Å |
| shell_rg | 21.40 Å |
| envelope_rg | 15.85 Å |
| shape_rg | 15.38 Å |
| total_rg | 16.45 Å |
| total_atoms | 1340 |
| n_residues | 146 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 55.0 Å |
| rg_real | 16.48 Å |
| rg_real_error | 0.27 Å |
| i0_real | 8.5210e+06 |
| i0_real_error | 9.0520e+04 |
| rg_reciprocal | 16.49 Å |
| i0_reciprocal | 8521000.0000 |
| total_estimate | 0.8832 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 20.7 Å |
| skewness | 0.200 |
| kurtosis | -0.342 |
| angular_range | — – 0.4800 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1408000.0000 |
| n_real_points | 78 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.826; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.998 |