9zld
Cryo-EM structure of hepatic amyloid fibril from a variant ATTRV122delta, single filament morphology
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9zld |
| deposition_date | 2025-12-08 |
| title | Cryo-EM structure of hepatic amyloid fibril from a variant ATTRV122delta, single filament morphology |
| keywords | ATTR, Systemic amyloidosis, V122delta, amyloid, PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 25.28 Å |
| rg_electron | 24.17 Å |
| i0 | 38488600.00 |
| molecular_weight | 50488.0 kDa |
| excluded_volume | 64117 ų |
| envelope_volume | 74012 ų |
| shell_volume | 25980 ų |
| envelope_diameter | 84.8 Å |
| shell_rg | 31.07 Å |
| envelope_rg | 24.27 Å |
| shape_rg | 24.16 Å |
| total_rg | 24.98 Å |
| total_atoms | 3575 |
| n_residues | 455 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 82.8 Å |
| rg_real | 25.29 Å |
| rg_real_error | 0.50 Å |
| i0_real | 3.8490e+07 |
| i0_real_error | 5.4280e+05 |
| rg_reciprocal | 25.29 Å |
| i0_reciprocal | 38490000.0000 |
| total_estimate | 0.8985 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 27.6 Å |
| skewness | 0.339 |
| kurtosis | -0.388 |
| angular_range | — – 0.3150 Å−1 |
| current_alpha | 0.0001 |
| highest_alpha | 5559000.0000 |
| n_real_points | 64 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.909; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.953; Smooth: 0.996 |