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9zrk

Cryo-EM structure of KCa3.1_I/calmodulin channel in complex with SKA111.

Method: ELECTRON MICROSCOPY D_max: 132.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9zrk
deposition_date	2025-12-20
title	Cryo-EM structure of KCa3.1_I/calmodulin channel in complex with SKA111.
keywords	;Intermediate conductance calcium-activated potassium channel, Ion channel, Calmodulin binding protein, TRANSPORT PROTEIN, MEMBRANE PROTEIN ;; MEMBRANE PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	43.76 Å
rg_electron	43.04 Å
i0	1407720000.00
molecular_weight	206360.0 kDa
excluded_volume	200110 Å³
envelope_volume	432360 Å³
shell_volume	82112 Å³
envelope_diameter	133.9 Å
shell_rg	50.25 Å
envelope_rg	41.38 Å
shape_rg	43.03 Å
total_rg	43.34 Å
total_atoms	15584
n_residues	2024
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	132.3 Å
rg_real	43.42 Å
rg_real_error	0.70 Å
i0_real	1.4080e+09
i0_real_error	2.1190e+07
rg_reciprocal	43.75 Å
i0_reciprocal	1408000000.0000
total_estimate	0.8899
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	58.8 Å
skewness	-0.002
kurtosis	-0.504
angular_range	— – 0.1800 Å⁻¹
current_alpha	0.0000
highest_alpha	97830000.0000
n_real_points	37
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.905; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.953; Smooth: 0.897

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	Intermediate conductance calcium-activated potassium channel protein 4
formula_weight	40753.6 kDa
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	15584

LGALRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVRPGFLGQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQVRFRHWFVAKLYMNTHPGRLLLGLTLGLWLTTAWVLSVAERQAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKHVHNFMMDIQYTKEMKESAARVLQEAWMFYKHTRRKESHAARRHQRKLLAAINAFRQVRLKHRKLREQVNSMVDISKMHMILYDLQQNLS

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 2 polymer

description	Calmodulin-1
formula_weight	16521.1 kDa
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	E,F,G,H

DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 3 non-polymer

description	5-methylnaphtho[1,2-d][1,3]thiazol-2-amine
formula_weight	214.3 kDa
src_method	syn
entity_count	4

Entity 4 non-polymer

description	POTASSIUM ION
formula_weight	39.1 kDa
src_method	syn
entity_count	4

Entity 5 non-polymer

description	CALCIUM ION
formula_weight	40.1 kDa
src_method	syn
entity_count	16

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.990 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	2.99 Å
resolution_method	—
num_particles	205224

fit	/app/data/saxs_computation/zr/9zrk/9zrk.fit
pddf	/app/data/pr_computation/zr/9zrk/9zrk.pr.out
profile	/app/data/saxs_computation/zr/9zrk/9zrk.dat

Cryo-EM structure of KCa3.1_I/calmodulin channel in complex with SKA111.

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)