6d42

Crystal structure of the KCa3.1 C-terminal four-helix bundle (with copper)

Method: X-RAY DIFFRACTION Dmax: 88.4 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Intermediate conductance calcium-activated potassium channel protein 4

Homo sapiens

UniProt O15554

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 376–415 Non-standard monomer:Yes (specific site not provided by mmCIF) CU COPPER (II) ION × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;290 K;0.1 M imidazole, pH 6.5 1.0 M sodium acetate Resolution 1.75 Å R-free 0.323
2 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain B; UniProt 376–415 Non-standard monomer:Yes (specific site not provided by mmCIF) CU COPPER (II) ION × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;290 K;0.1 M imidazole, pH 6.5 1.0 M sodium acetate Resolution 1.75 Å R-free 0.323

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

16 other PDB entries and 16 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KCNN4_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–42; UniProt 376–415 Author chain B; PDBConstruct 3–42; UniProt 376–415

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 6d42

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 6d42
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2. Structure Basics 2. Structure Basics

Entry ID entry_id6d42
Deposition date deposition_date2018-04-17
Structure title titleCrystal structure of the KCa3.1 C-terminal four-helix bundle (with copper)
Keywords keywordsFour-helix bundle, copper, MEMBRANE PROTEIN; MEMBRANE PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier22.74
Radius of gyration Rg (electron density) rg_electron23.42
Forward intensity I(0) i01634020.00
Molecular weight molecular_weight8754.0 kDa
Excluded volume excluded_volume10855 ų
Envelope volume envelope_volume16025 ų
Hydration-shell volume shell_volume7582 ų
Envelope diameter envelope_diameter86.3
Shell Rg shell_rg23.99
Envelope Rg envelope_rg23.64
Shape Rg shape_rg23.12
Total Rg total_rg24.36
Total atoms total_atoms600
Residues n_residues76
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax88.4
Rg (real space) rg_real23.35
Rg uncertainty (real space) rg_real_error1.25
I(0) (real space) i0_real1.6340e+06
I(0) uncertainty (real space) i0_real_error2.5250e+04
Rg (reciprocal space) rg_reciprocal23.20
I(0) (reciprocal space) i0_reciprocal1634000.0000
Solution quality estimate total_estimate0.6905
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary87.0
Skewness Skewness skewness0.703
Kurtosis Kurtosis kurtosis-0.060
Angular range angular_range— – 0.3500 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha63870.0000
Real-space data points n_real_points67
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.322; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.087; Smooth: 0.920

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)