NAD(+) hydrolase SARM1
Homo sapiens
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count | Chain A; UniProt 558–700 | Fragment:TIR domain | A1C9H 1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-4-[(6P)-7-{[2-(dimethylamino)ethyl]amino}-6-(5-fluoro-1H-indol-2-yl)-1-methyl-1H-imidazo[4,5-c]pyridin-2-yl]pyridin-1-ium (non-preferred name) × 2 | X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 6.4;293 K;0.1 M Bis-Tris-Propane, pH 6.4, 0.2 M K-thiocyanate, 8% PEG 3350 | Resolution 2.05 Å R-free 0.254 |
| 2 | Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count | Chain B; UniProt 558–700 | Fragment:TIR domain | A1C9H 1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-4-[(6P)-7-{[2-(dimethylamino)ethyl]amino}-6-(5-fluoro-1H-indol-2-yl)-1-methyl-1H-imidazo[4,5-c]pyridin-2-yl]pyridin-1-ium (non-preferred name) × 2 | X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 6.4;293 K;0.1 M Bis-Tris-Propane, pH 6.4, 0.2 M K-thiocyanate, 8% PEG 3350 | Resolution 2.05 Å R-free 0.254 |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 10RB | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 10RA Human SARM1 TIR domain bound to compound 6 Deposited 2026-02-02 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
560–700(141 aa)
Fragment:TIR domain
|
Not recorded | A1C9A 1-[(2R,3R,4S,5R)-5-({[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-4-[(4S,6P)-6-(5-fluoro-1H-indol-2-yl)imidazo[1,2-a]pyrazin-2-yl]pyridin-1-ium (non-preferred name) × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;0.1 M Bis-Tris propane pH 7.5, 0.2 M potassium thiocyanate, 12% (w/v) PEG3350
|
Resolution 1.79 Å R-free 0.239 |
| 10RA Human SARM1 TIR domain bound to compound 6 Deposited 2026-02-02 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain B
560–700(141 aa)
Fragment:TIR domain
|
Not recorded | A1C9A 1-[(2R,3R,4S,5R)-5-({[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-4-[(4S,6P)-6-(5-fluoro-1H-indol-2-yl)imidazo[1,2-a]pyrazin-2-yl]pyridin-1-ium (non-preferred name) × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 7.5;293 K;0.1 M Bis-Tris propane pH 7.5, 0.2 M potassium thiocyanate, 12% (w/v) PEG3350
|
Resolution 1.79 Å R-free 0.239 |
| 10RC Human SARM1 TIR domain bound to compound 22 Deposited 2026-02-02 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
558–700(143 aa)
Fragment:TIR domain
|
Not recorded | GOL GLYCEROL × 2 A1C9I 1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-4-{(6P)-7-{[2-(dimethylamino)ethyl]amino}-6-[6-fluoro-4-(pyrimidin-2-yl)-1H-indol-2-yl]-1-methyl-1H-imidazo[4,5-c]pyridin-2-yl}pyridin-1-ium (non-preferred name) × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1 M Bis-Tris-Propane, pH 6.5, 0.2 M K-thiocyanate, 7.5% PEG 3350
|
Resolution 1.90 Å R-free 0.245 |
| 10RC Human SARM1 TIR domain bound to compound 22 Deposited 2026-02-02 | Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain B
558–700(143 aa)
Fragment:TIR domain
|
Not recorded | A1C9I 1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-4-{(6P)-7-{[2-(dimethylamino)ethyl]amino}-6-[6-fluoro-4-(pyrimidin-2-yl)-1H-indol-2-yl]-1-methyl-1H-imidazo[4,5-c]pyridin-2-yl}pyridin-1-ium (non-preferred name) × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 6.5;293 K;0.1 M Bis-Tris-Propane, pH 6.5, 0.2 M K-thiocyanate, 7.5% PEG 3350
|
Resolution 1.90 Å R-free 0.245 |
| 6O0Q Crystal structure of the TIR domain from human SARM1 in complex with ribose Deposited 2019-02-17 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
560–700(141 aa)
|
Not recorded | BDR beta-D-ribofuranose × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis Tris propane pH 6.5, 0.2 M potassium thiocyanate, 11% PEG3350
|
Resolution 1.80 Å R-free 0.210 |
| 6O0Q Crystal structure of the TIR domain from human SARM1 in complex with ribose Deposited 2019-02-17 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain B
560–700(141 aa)
|
Not recorded | BDR beta-D-ribofuranose × 1 CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis Tris propane pH 6.5, 0.2 M potassium thiocyanate, 11% PEG3350
|
Resolution 1.80 Å R-free 0.210 |
| 6O0R Crystal structure of the TIR domain from human SARM1 in complex with glycerol Deposited 2019-02-17 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
560–700(141 aa)
|
Not recorded | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis Tris propane pH 6.5, 0.2 M potassium thiocyanate, 11% PEG3350
|
Resolution 1.80 Å R-free 0.232 |
| 6O0R Crystal structure of the TIR domain from human SARM1 in complex with glycerol Deposited 2019-02-17 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain B
560–700(141 aa)
|
Not recorded | GOL GLYCEROL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis Tris propane pH 6.5, 0.2 M potassium thiocyanate, 11% PEG3350
|
Resolution 1.80 Å R-free 0.232 |
| 6O0S Crystal structure of the tandem SAM domains from human SARM1 Deposited 2019-02-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
409–561(153 aa)
Chain B
409–561(153 aa)
Chain C
409–561(153 aa)
Chain D
409–561(153 aa)
Chain E
409–561(153 aa)
Chain F
409–561(153 aa)
Chain G
409–561(153 aa)
Chain H
409–561(153 aa)
|
Mutation:L473F Mutation:L473F Mutation:L473F Mutation:L473F Mutation:L473F Mutation:L473F Mutation:L473F Mutation:L473F | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;10.7% w/v PEG 4000, 21.4% v/v glycerol, 30 mM MgCl2 and 0.1 M bicine/Trizma base pH 8.0
|
Resolution 2.70 Å R-free 0.226 |
| 6O0T Crystal structure of selenomethionine labelled tandem SAM domains (L446M:L505M:L523M mutant) from human SARM1 Deposited 2019-02-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
409–561(153 aa)
Chain B
409–561(153 aa)
Chain C
409–561(153 aa)
Chain D
409–561(153 aa)
Chain E
409–561(153 aa)
Chain F
409–561(153 aa)
Chain G
409–561(153 aa)
Chain H
409–561(153 aa)
|
Mutation:L446M, L505M, L523M Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:L446M, L505M, L523M Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:L446M, L505M, L523M Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:L446M, L505M, L523M Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:L446M, L505M, L523M Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:L446M, L505M, L523M Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:L446M, L505M, L523M Non-standard monomer:Yes (specific site not provided by mmCIF) Mutation:L446M, L505M, L523M Non-standard monomer:Yes (specific site not provided by mmCIF) | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;17% PEG 8000, 20% ethylene glycol, 0.2 M sodium formate, 0.2 M ammonium acetate, 0.2 M trisodium citrate, 0.2 M sodium potassium L-tartrate, 10 mM DTT and 0.1 M Tris pH 7.9
|
Resolution 2.80 Å R-free 0.238 |
| 6O0U Crystal structure of the TIR domain H685A mutant from human SARM1 Deposited 2019-02-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
560–700(141 aa)
|
Mutation:H685A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M HEPES pH 7.5, 0.2 M MgCl2, 25% PEG3350
|
Resolution 3.03 Å R-free 0.234 |
| 6O0U Crystal structure of the TIR domain H685A mutant from human SARM1 Deposited 2019-02-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain B
560–700(141 aa)
|
Mutation:H685A | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M HEPES pH 7.5, 0.2 M MgCl2, 25% PEG3350
|
Resolution 3.03 Å R-free 0.234 |
| 6O0V Crystal structure of the TIR domain G601P mutant from human SARM1, crystal form 2 Deposited 2019-02-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
560–700(141 aa)
|
Mutation:G601P | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 MES pH 6.0, 0.2 M MgCl2, 20% PEG3350; or 0.1 MES pH 6.0, 1 M LiCl, 20% PEG6000
|
Resolution 2.07 Å R-free 0.233 |
| 6O0V Crystal structure of the TIR domain G601P mutant from human SARM1, crystal form 2 Deposited 2019-02-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain B
560–700(141 aa)
|
Mutation:G601P | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 MES pH 6.0, 0.2 M MgCl2, 20% PEG3350; or 0.1 MES pH 6.0, 1 M LiCl, 20% PEG6000
|
Resolution 2.07 Å R-free 0.233 |
| 6O0V Crystal structure of the TIR domain G601P mutant from human SARM1, crystal form 2 Deposited 2019-02-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 3 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain C
560–700(141 aa)
|
Mutation:G601P | MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 MES pH 6.0, 0.2 M MgCl2, 20% PEG3350; or 0.1 MES pH 6.0, 1 M LiCl, 20% PEG6000
|
Resolution 2.07 Å R-free 0.233 |
| 6O0V Crystal structure of the TIR domain G601P mutant from human SARM1, crystal form 2 Deposited 2019-02-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 4 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain D
560–700(141 aa)
|
Mutation:G601P | CL CHLORIDE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 MES pH 6.0, 0.2 M MgCl2, 20% PEG3350; or 0.1 MES pH 6.0, 1 M LiCl, 20% PEG6000
|
Resolution 2.07 Å R-free 0.233 |
| 6O1B Crystal structure of the TIR domain G601P mutant from human SARM1, crystal form 1 Deposited 2019-02-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
560–700(141 aa)
|
Mutation:G601P | MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 MES pH 6.0, 0.2 M MgCl2, 20% PEG3350; or 0.1 MES pH 6.0, 1 M LiCl, 20% PEG6000
|
Resolution 1.67 Å R-free 0.231 |
| 6QWV SARM1 SAM1-2 domains Deposited 2019-03-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
387–548(162 aa)
Chain B
387–548(162 aa)
Chain C
387–548(162 aa)
Chain D
387–548(162 aa)
Chain E
387–548(162 aa)
Chain F
387–548(162 aa)
Chain G
387–548(162 aa)
Chain H
387–548(162 aa)
|
Not recorded | EDO 1,2-ETHANEDIOL × 17 BME BETA-MERCAPTOETHANOL × 8 PEG DI(HYDROXYETHYL)ETHER × 2 PGE TRIETHYLENE GLYCOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;2% Tacsimate pH=7, 5% v/v 2-Propanol, 0.1 M Imidazole pH=7, 8% w/v polyethylene glycol 3350
|
Resolution 2.47 Å R-free 0.230 |
| 6QWV SARM1 SAM1-2 domains Deposited 2019-03-06 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain I
387–548(162 aa)
Chain J
387–548(162 aa)
Chain K
387–548(162 aa)
Chain L
387–548(162 aa)
Chain M
387–548(162 aa)
Chain N
387–548(162 aa)
Chain O
387–548(162 aa)
Chain P
387–548(162 aa)
|
Not recorded | EDO 1,2-ETHANEDIOL × 26 BME BETA-MERCAPTOETHANOL × 8 PEG DI(HYDROXYETHYL)ETHER × 3 PGE TRIETHYLENE GLYCOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;293 K;2% Tacsimate pH=7, 5% v/v 2-Propanol, 0.1 M Imidazole pH=7, 8% w/v polyethylene glycol 3350
|
Resolution 2.47 Å R-free 0.230 |
| 6WPK SARM1 Autoinhibited Conformation Deposited 2020-04-27 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
49–724(676 aa)
Chain B
49–724(676 aa)
Chain C
49–724(676 aa)
Chain D
49–724(676 aa)
Chain E
49–724(676 aa)
Chain F
49–724(676 aa)
Chain G
49–724(676 aa)
Chain H
49–724(676 aa)
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.30 Å |
| 6ZFX hSARM1 GraFix-ed Deposited 2020-06-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
26–724(699 aa)
Chain B
26–724(699 aa)
Chain C
26–724(699 aa)
Chain D
26–724(699 aa)
Chain E
26–724(699 aa)
Chain F
26–724(699 aa)
Chain G
26–724(699 aa)
Chain H
26–724(699 aa)
|
Not recorded | S1N (~{E})-4-methylnon-4-enedial × 16 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.88 Å |
| 6ZG0 SARM1 SAM1-2 domains Deposited 2020-06-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
26–724(699 aa)
Chain B
26–724(699 aa)
Chain C
26–724(699 aa)
Chain D
26–724(699 aa)
Chain E
26–724(699 aa)
Chain F
26–724(699 aa)
Chain G
26–724(699 aa)
Chain H
26–724(699 aa)
|
Not recorded | EDO 1,2-ETHANEDIOL × 17 BME BETA-MERCAPTOETHANOL × 8 PEG DI(HYDROXYETHYL)ETHER × 2 PGE TRIETHYLENE GLYCOL × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8.8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 7.70 Å |
| 6ZG1 SARM1 SAM1-2 domains Deposited 2020-06-18 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
387–548(162 aa)
Chain B
387–548(162 aa)
Chain C
387–548(162 aa)
Chain D
387–548(162 aa)
Chain E
387–548(162 aa)
Chain F
387–548(162 aa)
Chain G
387–548(162 aa)
Chain H
387–548(162 aa)
|
Not recorded | EDO 1,2-ETHANEDIOL × 17 BME BETA-MERCAPTOETHANOL × 8 PEG DI(HYDROXYETHYL)ETHER × 2 PGE TRIETHYLENE GLYCOL × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.77 Å |
| 7ANW hSARM1 NAD+ complex Deposited 2020-10-13 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
26–724(699 aa)
Chain B
26–724(699 aa)
Chain C
26–724(699 aa)
Chain D
26–724(699 aa)
Chain E
26–724(699 aa)
Chain F
26–724(699 aa)
Chain G
26–724(699 aa)
Chain H
26–724(699 aa)
|
Not recorded | NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.68 Å |
| 7CM5 Full-length Sarm1 in a self-inhibited state Deposited 2020-07-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
1–724(724 aa)
Chain B
1–724(724 aa)
Chain C
1–724(724 aa)
Chain D
1–724(724 aa)
Chain E
1–724(724 aa)
Chain F
1–724(724 aa)
Chain G
1–724(724 aa)
Chain H
1–724(724 aa)
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å |
| 7CM6 NAD+-bound Sarm1 in the self-inhibited state Deposited 2020-07-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
1–724(724 aa)
Chain B
1–724(724 aa)
Chain C
1–724(724 aa)
Chain D
1–724(724 aa)
Chain E
1–724(724 aa)
Chain F
1–724(724 aa)
Chain G
1–724(724 aa)
Chain H
1–724(724 aa)
|
Not recorded | NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å |
| 7CM7 NAD+-bound Sarm1 E642A in the self-inhibited state Deposited 2020-07-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
1–724(724 aa)
Chain B
1–724(724 aa)
Chain C
1–724(724 aa)
Chain D
1–724(724 aa)
Chain E
1–724(724 aa)
Chain F
1–724(724 aa)
Chain G
1–724(724 aa)
Chain H
1–724(724 aa)
|
Mutation:E624A Mutation:E624A Mutation:E624A Mutation:E624A Mutation:E624A Mutation:E624A Mutation:E624A Mutation:E624A | NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.60 Å |
| 7DJT Human SARM1 inhibitory state bounded with inhibitor dHNN Deposited 2020-11-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
27–724(698 aa)
Chain B
27–724(698 aa)
Chain C
27–724(698 aa)
Chain D
27–724(698 aa)
Chain E
27–724(698 aa)
Chain F
27–724(698 aa)
Chain G
27–724(698 aa)
Chain H
27–724(698 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) | H8L O3-methyl O5-(2-methylpropyl) 2,6-dimethyl-4-[2-(oxidanylamino)phenyl]pyridine-3,5-dicarboxylate × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE;BLOT TIME: 4S BLOT FORCE: -2
|
Resolution 2.80 Å |
| 7KNQ SARM1 Octamer Deposited 2020-11-05 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
1–724(724 aa)
Chain B
1–724(724 aa)
Chain C
1–724(724 aa)
Chain D
1–724(724 aa)
Chain E
1–724(724 aa)
Chain F
1–724(724 aa)
Chain G
1–724(724 aa)
Chain H
1–724(724 aa)
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.40 Å |
| 7LD0 Cryo-EM structure of ligand-free Human SARM1 Deposited 2021-01-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
28–724(697 aa)
Chain B
28–724(697 aa)
Chain C
28–724(697 aa)
Chain D
28–724(697 aa)
Chain E
28–724(697 aa)
Chain F
28–724(697 aa)
Chain G
28–724(697 aa)
Chain H
28–724(697 aa)
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.10 Å |
| 7NAG Crystal structure of the TIR domain from human SARM1 in complex with 1AD Deposited 2021-06-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
560–700(141 aa)
|
Not recorded | 1QD [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(5-iodanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis-Tris propane pH 7.0, 0.2 M potassium thiocyanate, and 10% PEG3350
|
Resolution 1.72 Å R-free 0.175 |
| 7NAG Crystal structure of the TIR domain from human SARM1 in complex with 1AD Deposited 2021-06-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain B
560–700(141 aa)
|
Not recorded | 1QD [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(5-iodanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis-Tris propane pH 7.0, 0.2 M potassium thiocyanate, and 10% PEG3350
|
Resolution 1.72 Å R-free 0.175 |
| 7NAH Crystal structure of the TIR domain from human SARM1 in complex with 2AD Deposited 2021-06-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
560–700(141 aa)
|
Not recorded | 1OF [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(8-oxidanylidene-7~{H}-2,7-naphthyridin-2-yl)oxolan-2-yl]methyl hydrogen phosphate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis-Tris propane pH 7.0, 0.2 M potassium thiocyanate, and 10% PEG3350
|
Resolution 1.79 Å R-free 0.199 |
| 7NAH Crystal structure of the TIR domain from human SARM1 in complex with 2AD Deposited 2021-06-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain B
560–700(141 aa)
|
Not recorded | 1OF [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(8-oxidanylidene-7~{H}-2,7-naphthyridin-2-yl)oxolan-2-yl]methyl hydrogen phosphate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis-Tris propane pH 7.0, 0.2 M potassium thiocyanate, and 10% PEG3350
|
Resolution 1.79 Å R-free 0.199 |
| 7NAI Crystal structure of the TIR domain from human SARM1 in complex with 3AD Deposited 2021-06-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
560–700(141 aa)
|
Not recorded | 1O4 [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis-Tris propane pH 7.0, 0.2 M potassium thiocyanate, and 10% PEG3350
|
Resolution 1.74 Å R-free 0.197 |
| 7NAI Crystal structure of the TIR domain from human SARM1 in complex with 3AD Deposited 2021-06-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain B
560–700(141 aa)
|
Not recorded | 1O4 [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis-Tris propane pH 7.0, 0.2 M potassium thiocyanate, and 10% PEG3350
|
Resolution 1.74 Å R-free 0.197 |
| 7NAJ Crystal structure of the TIR domain from human SARM1 in complex with ara-2'F-ADPR Deposited 2021-06-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain A
560–700(141 aa)
|
Not recorded | 1LK 1,4-anhydro-2-deoxy-2-fluoro-5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-D-arabinitol × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis-Tris propane pH 7.0, 0.2 M potassium thiocyanate, and 10% PEG3350
|
Resolution 1.60 Å R-free 0.227 |
| 7NAJ Crystal structure of the TIR domain from human SARM1 in complex with ara-2'F-ADPR Deposited 2021-06-21 | Different construct Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric |
Chain B
560–700(141 aa)
|
Not recorded | 1LK 1,4-anhydro-2-deoxy-2-fluoro-5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-D-arabinitol × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;0.1 M Bis-Tris propane pH 7.0, 0.2 M potassium thiocyanate, and 10% PEG3350
|
Resolution 1.60 Å R-free 0.227 |
| 7NAK Cryo-EM structure of activated human SARM1 in complex with NMN and 1AD (TIR:1AD) Deposited 2021-06-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
28–724(697 aa)
Chain B
28–724(697 aa)
Chain C
28–724(697 aa)
Chain D
28–724(697 aa)
Chain E
28–724(697 aa)
Chain F
28–724(697 aa)
Chain G
28–724(697 aa)
Chain H
28–724(697 aa)
|
Not recorded | 1QD [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(5-iodanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.90 Å |
| 7NAL Cryo-EM structure of activated human SARM1 in complex with NMN and 1AD (ARM and SAM domains) Deposited 2021-06-21 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
28–724(697 aa)
Chain B
28–724(697 aa)
Chain C
28–724(697 aa)
Chain D
28–724(697 aa)
Chain E
28–724(697 aa)
Chain F
28–724(697 aa)
Chain G
28–724(697 aa)
Chain H
28–724(697 aa)
|
Not recorded | NMN BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.00 Å |
| 7QG0 Inhibitor-induced hSARM1 duplex Deposited 2021-12-07 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 16 PDB declaration: hexadecameric |
Chain A
26–724(699 aa)
Chain B
26–724(699 aa)
Chain C
26–724(699 aa)
Chain D
26–724(699 aa)
Chain E
26–724(699 aa)
Chain F
26–724(699 aa)
Chain G
26–724(699 aa)
Chain H
26–724(699 aa)
Chain I
26–724(699 aa)
Chain J
26–724(699 aa)
Chain K
26–724(699 aa)
Chain L
26–724(699 aa)
Chain M
26–724(699 aa)
Chain N
26–724(699 aa)
Chain O
26–724(699 aa)
Chain P
26–724(699 aa)
|
Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q Mutation:E642Q | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 4.02 Å |
| 8D0C Human SARM1 TIR domain bound to NB-3-ADPR Deposited 2022-05-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
558–700(143 aa)
Fragment:TIR domain
Chain B
558–700(143 aa)
Fragment:TIR domain
|
Not recorded | Q1F [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[(1~{S})-1-[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]ethyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;100 mM Bis-Tris propane pH 6.5, 200 mM potassium thiocyanate, and 15% polyethylene glycol 3350
|
Resolution 2.09 Å R-free 0.223 |
| 8D0D Human SARM1 TIR domain bound to an NB-7-ADPR adduct Deposited 2022-05-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
558–700(143 aa)
Fragment:TIR domain
Chain B
558–700(143 aa)
Fragment:TIR domain
|
Not recorded | Q0L [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R})-5-[4-[3-[3-(4-chlorophenyl)propanoylamino]-4-methyl-1~{H}-pyrazol-5-yl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;100 mM Bis-Tris propane pH 6.5, 200 mM potassium thiocyanate, and 15% polyethylene glycol 3350
|
Resolution 1.96 Å R-free 0.233 |
| 8D0E Human SARM1 TIR domain bound to NB-7 Deposited 2022-05-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
558–700(143 aa)
Fragment:TIR domain
Chain B
558–700(143 aa)
Fragment:TIR domain
|
Not recorded | Q0C 3-(4-chlorophenyl)-N-[4-methyl-3-(pyridin-4-yl)-1H-pyrazol-5-yl]propanamide × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;100 mM Bis-Tris propane pH 6.5, 200 mM potassium thiocyanate, and 15% polyethylene glycol 3350
|
Resolution 1.88 Å R-free 0.228 |
| 8D0F Human SARM1 TIR domain bound to NB-2-ADPR Deposited 2022-05-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
558–700(143 aa)
Fragment:TIR domain
Chain B
558–700(143 aa)
Fragment:TIR domain
|
Not recorded | Q0U [[(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]methyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;100 mM Bis-Tris propane pH 6.5, 200 mM potassium thiocyanate, and 15% polyethylene glycol 3350
|
Resolution 1.74 Å R-free 0.253 |
| 8D0G Human SARM1 TIR domain bound to NB-3-ADPRP Deposited 2022-05-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
558–700(143 aa)
Fragment:TIR domain
Chain B
558–700(143 aa)
Fragment:TIR domain
|
Not recorded | Q1X [[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[(1~{S})-1-[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]ethyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;100 mM Bis-Tris propane pH 6.5, 200 mM potassium thiocyanate, and 15% polyethylene glycol 3350
|
Resolution 1.99 Å R-free 0.238 |
| 8D0H Human SARM1 TIR domain bound to NB-3-GDPR Deposited 2022-05-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
558–700(143 aa)
Fragment:TIR domain
Chain B
558–700(143 aa)
Fragment:TIR domain
|
Not recorded | Q1O [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[(1~{S})-1-[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]ethyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;100 mM Bis-Tris propane pH 6.5, 200 mM potassium thiocyanate, and 15% polyethylene glycol 3350
|
Resolution 2.37 Å R-free 0.281 |
| 8D0I Human SARM1 bound to an NB-3 eADPR adduct Deposited 2022-05-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
558–700(143 aa)
Chain B
558–700(143 aa)
|
Not recorded | PZ7 [[(2~{R},3~{S},4~{R},5~{R})-5-imidazo[2,1-f]purin-3-yl-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[(1~{S})-1-[methyl-[2,2,2-tris(fluoranyl)ethylcarbamoyl]amino]ethyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;291.15 K;100 mM Bis-Tris propane pH 6.5, 200 mM potassium thiocyanate, and 15% polyethylene glycol 3350
|
Resolution 2.00 Å R-free 0.216 |
| 8D0J Apo Human SARM1 TIR domain Deposited 2022-05-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
558–700(143 aa)
Fragment:TIR domain
Chain B
558–700(143 aa)
Fragment:TIR domain
|
Not recorded | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;298.15 K;100 mM Bis-Tris propane pH 6.5, 200 mM potassium thiocyanate, and 15% polyethylene glycol 3350
|
Resolution 1.94 Å R-free 0.227 |
| 8GNI Human SARM1 bounded with NMN and Nanobody-C6, Conformation 1 Deposited 2022-08-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain A
1–724(724 aa)
Chain B
1–724(724 aa)
|
Not recorded | NMN BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE;Blot time: 4s
Blot force: -2
|
Resolution 3.74 Å |
| 8GNJ Human SARM1 bounded with NMN and Nanobody-C6, Conformation 2 Deposited 2022-08-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 3 PDB declaration: trimeric |
Chain A
1–724(724 aa)
Chain B
1–724(724 aa)
|
Not recorded | NMN BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE × 1 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE;Blot time: 4s
Blot force: -2
|
Resolution 3.78 Å |
| 8GQ5 Human SARM1 bounded with NMN and Nanobody-C6, double-layer structure Deposited 2022-08-29 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 32 PDB declaration: 32-meric |
Chain A
1–724(724 aa)
Chain B
1–724(724 aa)
Chain C
1–724(724 aa)
Chain D
1–724(724 aa)
Chain E
1–724(724 aa)
Chain F
1–724(724 aa)
Chain G
1–724(724 aa)
Chain H
1–724(724 aa)
Chain I
1–724(724 aa)
Chain J
1–724(724 aa)
Chain K
1–724(724 aa)
Chain L
1–724(724 aa)
Chain M
1–724(724 aa)
Chain N
1–724(724 aa)
Chain O
1–724(724 aa)
Chain P
1–724(724 aa)
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE;Blot time: 4s
Blot force: -2
|
Resolution 2.70 Å |
| 8P2L A CHIMERA construct containing human SARM1 ARM and SAM domains and C. elegans TIR domain. Deposited 2023-05-16 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Insufficient information Homooligomer;Protein × 16 PDB declaration: hexadecameric |
Chain A
26–562(537 aa)
Chain B
26–562(537 aa)
Chain C
26–562(537 aa)
Chain D
26–562(537 aa)
Chain E
26–562(537 aa)
Chain F
26–562(537 aa)
Chain G
26–562(537 aa)
Chain H
26–562(537 aa)
Chain I
26–562(537 aa)
Chain J
26–562(537 aa)
Chain K
26–562(537 aa)
Chain L
26–562(537 aa)
Chain M
26–562(537 aa)
Chain N
26–562(537 aa)
Chain O
26–562(537 aa)
Chain P
26–562(537 aa)
|
Not recorded | NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.68 Å |
| 9HQ0 SARM1 TIR domain in complex with compound 7-ADPR Deposited 2024-12-16 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
558–700(143 aa)
Chain B
558–700(143 aa)
|
Not recorded | A1IW3 [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[(1~{S})-1-[[(3~{R})-4,4-bis(fluoranyl)oxolan-3-yl]carbamoyl-methyl-amino]ethyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 2 EDO 1,2-ETHANEDIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;of 0.1 M Bis-Tris propane pH 6.5, 14-18% (w/v) PEG 3350 and 0.30-0.45 M potassium thiocyanate
|
Resolution 2.13 Å R-free 0.241 |
| 9HQF SARM1 TIR domain in complex with compound 7-ADPR Deposited 2024-12-16 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
558–700(143 aa)
Chain B
558–700(143 aa)
|
Not recorded | A1IWL [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[(5~{S})-5-[[(3~{R})-4,4-bis(fluoranyl)oxolan-3-yl]carbamoyl-methyl-amino]-2,3,4,5-tetrahydrooxepino[2,3-c]pyridin-8-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1 M Bis-Tris propane pH 6.5, 14-18% (w/v) PEG 3350 and 0.30-0.45 M potassium thiocyanate
|
Resolution 1.73 Å R-free 0.256 |
| 9HQH SARM1 TIR domain in complex with compound 28-ADPR Deposited 2024-12-16 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
558–700(143 aa)
Chain B
558–700(143 aa)
|
Not recorded | A1IWN [[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[(1~{R})-1-[[(3~{R})-4,4-bis(fluoranyl)oxolan-3-yl]carbamoyl-methyl-amino]-2-phenoxy-ethyl]pyridin-1-ium-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;293 K;0.1 M Bis-Tris propane pH 6.5, 14-18% (w/v) PEG 3350 and 0.30-0.45 M potassium thiocyanate
|
Resolution 1.99 Å R-free 0.241 |
| 9L2D Structure of SARM1 bound to M1 in the intermediate state 1 Deposited 2024-12-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
1–724(724 aa)
Chain B
1–724(724 aa)
Chain C
1–724(724 aa)
Chain D
1–724(724 aa)
Chain E
1–724(724 aa)
Chain F
1–724(724 aa)
Chain G
1–724(724 aa)
Chain H
1–724(724 aa)
|
Not recorded | A1EIV [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(3-sulfanylpyridin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.83 Å |
| 9L2E Structure of SARM1 bound to M1 in the intermediate state 2 Deposited 2024-12-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
1–724(724 aa)
Chain B
1–724(724 aa)
Chain C
1–724(724 aa)
Chain D
1–724(724 aa)
Chain E
1–724(724 aa)
Chain F
1–724(724 aa)
Chain G
1–724(724 aa)
Chain H
1–724(724 aa)
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 2.46 Å |
| 9L2F Structure of SARM1 bound to M1 and 1AD in the active state Deposited 2024-12-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
1–724(724 aa)
Chain B
1–724(724 aa)
Chain C
1–724(724 aa)
Chain D
1–724(724 aa)
Chain E
1–724(724 aa)
Chain F
1–724(724 aa)
Chain G
1–724(724 aa)
Chain H
1–724(724 aa)
|
Not recorded | A1EIV [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(3-sulfanylpyridin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.55 Å |
| 9L2G Structure of SARM1 2C-mutant bound to M1 Deposited 2024-12-17 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
1–724(724 aa)
Chain B
1–724(724 aa)
Chain C
1–724(724 aa)
Chain D
1–724(724 aa)
Chain E
1–724(724 aa)
Chain F
1–724(724 aa)
Chain G
1–724(724 aa)
Chain H
1–724(724 aa)
|
Not recorded | A1EIV [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(3-sulfanylpyridin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.27 Å |
| 9MW1 Structure of SARM1 TIR domain bound to G8758 Deposited 2025-01-16 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
560–700(141 aa)
Chain B
560–700(141 aa)
|
Not recorded | A1BTS [(2~{R},3~{S},4~{R},5~{R})-5-[4-[5-[(6~{R})-6-(4-chloranyl-3-fluoranyl-phenyl)-2-oxidanylidene-1,3-oxazinan-3-yl]-1~{H}-pyrazol-3-yl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;298 K;100mM bis-tris propane pH 6.5-7.5, 0.2-0.6M potassium thiocyanate, and 12-20% PEG3350
|
Resolution 2.10 Å R-free 0.297 |
| 9MW2 Structure of SARM1 TIR domain bound to G6831 Deposited 2025-01-16 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
560–700(141 aa)
Chain B
560–700(141 aa)
|
Not recorded | A1BU7 [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[3-[(4~{S})-4-(4-chloranyl-3-fluoranyl-phenyl)-2-oxidanylidene-piperidin-1-yl]-1-bicyclo[1.1.1]pentanyl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;298 K;100mM bis-tris propane pH 6.5-7.5, 0.2-0.6M potassium thiocyanate, and 12-20% PEG3350
|
Resolution 1.75 Å R-free 0.222 |
| 9MW3 Structure of SARM1 TIR domain bound to G2756 Deposited 2025-01-16 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 2 PDB declaration: dimeric |
Chain A
560–700(141 aa)
Chain B
560–700(141 aa)
|
Not recorded | A1BTR [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-[5-[(4~{S})-4-(4-fluorophenyl)-2-oxidanylidene-piperidin-1-yl]pyridin-2-yl]pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;298 K;100mM bis-tris propane pH 6.5-7.5, 0.2-0.6M potassium thiocyanate, and 12-20% PEG3350
|
Resolution 1.93 Å R-free 0.200 |
| 9TZW SARM1 TIR with BEXi adduct 6 Deposited 2026-01-24 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
560–700(141 aa)
Chain B
560–700(141 aa)
Chain C
560–700(141 aa)
Chain D
560–700(141 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY mmCIF provides none of the parsed conditions | Resolution 3.30 Å |
| 9TZY SARM1 TIR with BEXi adduct 17 Deposited 2026-01-25 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 4 PDB declaration: tetrameric |
Chain A
560–700(141 aa)
Chain B
560–700(141 aa)
Chain C
560–700(141 aa)
Chain D
560–700(141 aa)
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY mmCIF provides none of the parsed conditions | Resolution 2.94 Å |
| 9UGA SARM1 senses DNA to promote NAD degradation Deposited 2025-04-11 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
28–724(697 aa)
Chain B
28–724(697 aa)
Chain C
28–724(697 aa)
Chain D
28–724(697 aa)
Chain E
28–724(697 aa)
Chain F
28–724(697 aa)
Chain G
28–724(697 aa)
Chain H
28–724(697 aa)
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 8
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.06 Å |
| 9UGJ Structure of SARM1 bound to SIR3-ADPR Deposited 2025-04-12 | Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 8 PDB declaration: octameric |
Chain A
1–724(724 aa)
Chain B
1–724(724 aa)
Chain C
1–724(724 aa)
Chain D
1–724(724 aa)
Chain E
1–724(724 aa)
Chain F
1–724(724 aa)
Chain G
1–724(724 aa)
Chain H
1–724(724 aa)
|
Not recorded | A1EO4 [[(2~{S},3~{R},4~{S},5~{S})-5-(4-azanylimidazo[4,5-d]pyridazin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-[4-methyl-3-(2-oxidanylidene-3~{H}-1,3-benzoxazol-6-yl)pyridin-1-ium-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate × 8 |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 7.4
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.85 Å |
54 other PDB entries and 67 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | SARM1_HUMAN |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A; PDBConstruct 1–143; UniProt 558–700 Author chain B; PDBConstruct 1–143; UniProt 558–700 |