1b7t

MYOSIN DIGESTED BY PAPAIN

Method: X-RAY DIFFRACTION Dmax: 165.8 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

MYOSIN HEAVY CHAIN

OrganismNot specified

UniProt P24733

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain A; UniProt 1–835 Fragment:PAPAIN DIGESTED, SUBFRAGMENT 1 (S1) MYOSIN REGULATORY LIGHT CHAIN × 1 (P13543) MYOSIN ESSENTIAL LIGHT CHAIN × 1 (P07291) MG MAGNESIUM ION × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 1 CA CALCIUM ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:pH 8;pH 8.0 Resolution 2.50 Å R-free 0.297

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

19 other PDB entries and 21 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MYS_AEQIR
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–835; UniProt 1–835

MYOSIN REGULATORY LIGHT CHAIN

OrganismNot specified

UniProt P13543

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain Y; UniProt 2–157 Fragment:PAPAIN DIGESTED, SUBFRAGMENT 1 (S1) MYOSIN HEAVY CHAIN × 1 (P24733) MYOSIN ESSENTIAL LIGHT CHAIN × 1 (P07291) MG MAGNESIUM ION × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 1 CA CALCIUM ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:pH 8;pH 8.0 Resolution 2.50 Å R-free 0.297

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

17 other PDB entries and 18 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MLR_AEQIR
Isoform
PDB entities 2
Chains and sequence ranges Author chain Y; PDBConstruct 1–156; UniProt 2–157

MYOSIN ESSENTIAL LIGHT CHAIN

OrganismNot specified

UniProt P07291

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count Chain Z; UniProt 2–157 Fragment:PAPAIN DIGESTED, SUBFRAGMENT 1 (S1) MYOSIN HEAVY CHAIN × 1 (P24733) MYOSIN REGULATORY LIGHT CHAIN × 1 (P13543) MG MAGNESIUM ION × 2 ADP ADENOSINE-5'-DIPHOSPHATE × 1 CA CALCIUM ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:pH 8;pH 8.0 Resolution 2.50 Å R-free 0.297

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

17 other PDB entries and 18 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name MLE_AEQIR
Isoform
PDB entities 3
Chains and sequence ranges Author chain Z; PDBConstruct 1–156; UniProt 2–157

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1b7t

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1b7t
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1b7t
Deposition date deposition_date1999-01-15
Structure title titleMYOSIN DIGESTED BY PAPAIN
Keywords keywordsMYOSIN MOTOR, MYOSIN; MYOSIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier46.98
Radius of gyration Rg (electron density) rg_electron48.78
Forward intensity I(0) i0204983000.00
Molecular weight molecular_weight117730.0 kDa
Excluded volume excluded_volume147430 ų
Envelope volume envelope_volume217300 ų
Hydration-shell volume shell_volume41886 ų
Envelope diameter envelope_diameter176.0
Shell Rg shell_rg45.58
Envelope Rg envelope_rg49.00
Shape Rg shape_rg48.77
Total Rg total_rg48.65
Total atoms total_atoms8279
Residues n_residues1057
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax165.8
Rg (real space) rg_real48.22
Rg uncertainty (real space) rg_real_error2.22
I(0) (real space) i0_real2.0500e+08
I(0) uncertainty (real space) i0_real_error4.2480e+06
Rg (reciprocal space) rg_reciprocal46.99
I(0) (reciprocal space) i0_reciprocal204700000.0000
Solution quality estimate total_estimate0.6782
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary34.1
Skewness Skewness skewness0.735
Kurtosis Kurtosis kurtosis-0.212
Angular range angular_range— – 0.1700 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha16860000.0000
Real-space data points n_real_points35
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.395; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.443; Smooth: 0.185

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (7)

7. Fold Classification (SCOP + CATH) 10 domains

SCOP 2.08 (4 domains)

Domain ID domain_idd1b7ta1
Class classb — All beta proteins
Fold Fold foldb.34 — SH3-like barrel
Superfamily Superfamily superfamilyb.34.3 — Myosin S1 fragment, N-terminal domain
Family Family familyb.34.3.1 — Myosin S1 fragment, N-terminal domain
Domain ID domain_idd1b7ta4
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.9 — Motor proteins
Domain ID domain_idd1b7ty_
Class classa — All alpha proteins
Fold Fold folda.39 — EF Hand-like
Superfamily Superfamily superfamilya.39.1 — EF-hand
Family Family familya.39.1.5 — Calmodulin-like
Domain ID domain_idd1b7tz_
Class classa — All alpha proteins
Fold Fold folda.39 — EF Hand-like
Superfamily Superfamily superfamilya.39.1 — EF-hand
Family Family familya.39.1.5 — Calmodulin-like

CATH v4.4 (6 domains)

Domain ID domain_id1b7tA02
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology30 — SH3 type barrels.
Homologous superfamily homologous superfamily360 — Myosin S1 fragment, N-terminal
Domain ID domain_id1b7tA04
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology58 — Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homologous superfamily homologous superfamily530
Domain ID domain_id1b7tY01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology238 — Recoverin; domain 1
Homologous superfamily homologous superfamily10 — EF-hand
Domain ID domain_id1b7tY02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology238 — Recoverin; domain 1
Homologous superfamily homologous superfamily10 — EF-hand
Domain ID domain_id1b7tZ01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology238 — Recoverin; domain 1
Homologous superfamily homologous superfamily10 — EF-hand
Domain ID domain_id1b7tZ02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology238 — Recoverin; domain 1
Homologous superfamily homologous superfamily10 — EF-hand

8. Citations (1)

9. Files and Curves (10)